Tantalum in PDB 6otl: Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Protein crystallography data
The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl
was solved by
D.N.Jones,
E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
2.59
|
Space group
|
P 31 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
87.760,
87.760,
59.630,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.4 /
20.9
|
Other elements in 6otl:
The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde also contains other interesting chemical elements:
Tantalum Binding Sites:
The binding sites of Tantalum atom in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
(pdb code 6otl). This binding sites where shown within
5.0 Angstroms radius around Tantalum atom.
In total 6 binding sites of Tantalum where determined in the
Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl:
Jump to Tantalum binding site number:
1;
2;
3;
4;
5;
6;
Tantalum binding site 1 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 1 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 1 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:68.3
occ:0.72
|
TA1
|
A:TBR201
|
0.0
|
68.3
|
0.7
|
BR2
|
A:TBR201
|
2.6
|
67.5
|
0.7
|
BR3
|
A:TBR201
|
2.6
|
69.3
|
0.6
|
BR4
|
A:TBR201
|
2.6
|
64.7
|
0.6
|
BR1
|
A:TBR201
|
2.6
|
65.8
|
0.6
|
TA2
|
A:TBR201
|
2.9
|
68.3
|
0.8
|
TA6
|
A:TBR201
|
2.9
|
76.9
|
0.8
|
TA5
|
A:TBR201
|
3.0
|
78.2
|
0.8
|
TA3
|
A:TBR201
|
3.0
|
78.7
|
0.8
|
BRB
|
A:TBR201
|
4.1
|
73.1
|
0.6
|
BR5
|
A:TBR201
|
4.2
|
70.5
|
0.7
|
TA4
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
BR6
|
A:TBR201
|
4.2
|
69.6
|
0.5
|
BRC
|
A:TBR201
|
4.3
|
61.9
|
0.6
|
|
Tantalum binding site 2 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 2 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 2 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:68.3
occ:0.75
|
TA2
|
A:TBR201
|
0.0
|
68.3
|
0.8
|
BRC
|
A:TBR201
|
2.6
|
61.9
|
0.6
|
BR9
|
A:TBR201
|
2.6
|
70.3
|
0.6
|
BR5
|
A:TBR201
|
2.6
|
70.5
|
0.7
|
BR1
|
A:TBR201
|
2.6
|
65.8
|
0.6
|
TA6
|
A:TBR201
|
2.9
|
76.9
|
0.8
|
TA1
|
A:TBR201
|
2.9
|
68.3
|
0.7
|
TA4
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA3
|
A:TBR201
|
3.0
|
78.7
|
0.8
|
TA5
|
A:TBR201
|
4.1
|
78.2
|
0.8
|
BR8
|
A:TBR201
|
4.2
|
72.4
|
0.5
|
BRA
|
A:TBR201
|
4.2
|
73.9
|
0.6
|
BR2
|
A:TBR201
|
4.2
|
67.5
|
0.7
|
BR4
|
A:TBR201
|
4.2
|
64.7
|
0.6
|
|
Tantalum binding site 3 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 3 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 3 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:78.7
occ:0.83
|
TA3
|
A:TBR201
|
0.0
|
78.7
|
0.8
|
BR5
|
A:TBR201
|
2.6
|
70.5
|
0.7
|
BR6
|
A:TBR201
|
2.6
|
69.6
|
0.5
|
BRA
|
A:TBR201
|
2.6
|
73.9
|
0.6
|
BR2
|
A:TBR201
|
2.6
|
67.5
|
0.7
|
TA5
|
A:TBR201
|
2.9
|
78.2
|
0.8
|
TA4
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA1
|
A:TBR201
|
3.0
|
68.3
|
0.7
|
TA2
|
A:TBR201
|
3.0
|
68.3
|
0.8
|
BR9
|
A:TBR201
|
4.1
|
70.3
|
0.6
|
TA6
|
A:TBR201
|
4.2
|
76.9
|
0.8
|
BR3
|
A:TBR201
|
4.2
|
69.3
|
0.6
|
BR1
|
A:TBR201
|
4.2
|
65.8
|
0.6
|
BR7
|
A:TBR201
|
4.2
|
74.3
|
0.5
|
|
Tantalum binding site 4 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 4 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 4 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:78.7
occ:0.77
|
TA4
|
A:TBR201
|
0.0
|
78.7
|
0.8
|
BR8
|
A:TBR201
|
2.6
|
72.4
|
0.5
|
BRA
|
A:TBR201
|
2.6
|
73.9
|
0.6
|
BR9
|
A:TBR201
|
2.6
|
70.3
|
0.6
|
BR7
|
A:TBR201
|
2.6
|
74.3
|
0.5
|
TA5
|
A:TBR201
|
2.9
|
78.2
|
0.8
|
TA2
|
A:TBR201
|
2.9
|
68.3
|
0.8
|
TA3
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA6
|
A:TBR201
|
2.9
|
76.9
|
0.8
|
BRC
|
A:TBR201
|
4.1
|
61.9
|
0.6
|
BR6
|
A:TBR201
|
4.2
|
69.6
|
0.5
|
TA1
|
A:TBR201
|
4.2
|
68.3
|
0.7
|
BR5
|
A:TBR201
|
4.2
|
70.5
|
0.7
|
BRB
|
A:TBR201
|
4.2
|
73.1
|
0.6
|
|
Tantalum binding site 5 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 5 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 5 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:78.2
occ:0.80
|
TA5
|
A:TBR201
|
0.0
|
78.2
|
0.8
|
BR7
|
A:TBR201
|
2.6
|
74.3
|
0.5
|
BR6
|
A:TBR201
|
2.6
|
69.6
|
0.5
|
BR3
|
A:TBR201
|
2.6
|
69.3
|
0.6
|
BRB
|
A:TBR201
|
2.6
|
73.1
|
0.6
|
TA3
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA4
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA6
|
A:TBR201
|
2.9
|
76.9
|
0.8
|
TA1
|
A:TBR201
|
3.0
|
68.3
|
0.7
|
BR4
|
A:TBR201
|
4.1
|
64.7
|
0.6
|
TA2
|
A:TBR201
|
4.1
|
68.3
|
0.8
|
BRA
|
A:TBR201
|
4.2
|
73.9
|
0.6
|
BR2
|
A:TBR201
|
4.2
|
67.5
|
0.7
|
BR8
|
A:TBR201
|
4.2
|
72.4
|
0.5
|
|
Tantalum binding site 6 out
of 6 in 6otl
Go back to
Tantalum Binding Sites List in 6otl
Tantalum binding site 6 out
of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde
Mono view
Stereo pair view
|
A full contact list of Tantalum with other atoms in the Ta binding
site number 6 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ta201
b:76.9
occ:0.84
|
TA6
|
A:TBR201
|
0.0
|
76.9
|
0.8
|
BR4
|
A:TBR201
|
2.6
|
64.7
|
0.6
|
BRB
|
A:TBR201
|
2.6
|
73.1
|
0.6
|
BRC
|
A:TBR201
|
2.6
|
61.9
|
0.6
|
BR8
|
A:TBR201
|
2.6
|
72.4
|
0.5
|
TA2
|
A:TBR201
|
2.9
|
68.3
|
0.8
|
TA1
|
A:TBR201
|
2.9
|
68.3
|
0.7
|
TA4
|
A:TBR201
|
2.9
|
78.7
|
0.8
|
TA5
|
A:TBR201
|
2.9
|
78.2
|
0.8
|
BR3
|
A:TBR201
|
4.1
|
69.3
|
0.6
|
BR7
|
A:TBR201
|
4.1
|
74.3
|
0.5
|
TA3
|
A:TBR201
|
4.2
|
78.7
|
0.8
|
BR1
|
A:TBR201
|
4.2
|
65.8
|
0.6
|
BR9
|
A:TBR201
|
4.3
|
70.3
|
0.6
|
|
Reference:
D.N.Jones,
E.Murphy.
Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde To Be Published.
Page generated: Fri Oct 11 08:02:44 2024
|