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Tantalum in PDB 6otl: Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde

Protein crystallography data

The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl was solved by D.N.Jones, E.Murphy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 2.59
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 87.760, 87.760, 59.630, 90.00, 90.00, 120.00
R / Rfree (%) 19.4 / 20.9

Other elements in 6otl:

The structure of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde also contains other interesting chemical elements:

Bromine (Br) 12 atoms

Tantalum Binding Sites:

The binding sites of Tantalum atom in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde (pdb code 6otl). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 6 binding sites of Tantalum where determined in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde, PDB code: 6otl:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6;

Tantalum binding site 1 out of 6 in 6otl

Go back to Tantalum Binding Sites List in 6otl
Tantalum binding site 1 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:68.3
occ:0.72
TA1 A:TBR201 0.0 68.3 0.7
BR2 A:TBR201 2.6 67.5 0.7
BR3 A:TBR201 2.6 69.3 0.6
BR4 A:TBR201 2.6 64.7 0.6
BR1 A:TBR201 2.6 65.8 0.6
TA2 A:TBR201 2.9 68.3 0.8
TA6 A:TBR201 2.9 76.9 0.8
TA5 A:TBR201 3.0 78.2 0.8
TA3 A:TBR201 3.0 78.7 0.8
BRB A:TBR201 4.1 73.1 0.6
BR5 A:TBR201 4.2 70.5 0.7
TA4 A:TBR201 4.2 78.7 0.8
BR6 A:TBR201 4.2 69.6 0.5
BRC A:TBR201 4.3 61.9 0.6

Tantalum binding site 2 out of 6 in 6otl

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Tantalum binding site 2 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:68.3
occ:0.75
TA2 A:TBR201 0.0 68.3 0.8
BRC A:TBR201 2.6 61.9 0.6
BR9 A:TBR201 2.6 70.3 0.6
BR5 A:TBR201 2.6 70.5 0.7
BR1 A:TBR201 2.6 65.8 0.6
TA6 A:TBR201 2.9 76.9 0.8
TA1 A:TBR201 2.9 68.3 0.7
TA4 A:TBR201 2.9 78.7 0.8
TA3 A:TBR201 3.0 78.7 0.8
TA5 A:TBR201 4.1 78.2 0.8
BR8 A:TBR201 4.2 72.4 0.5
BRA A:TBR201 4.2 73.9 0.6
BR2 A:TBR201 4.2 67.5 0.7
BR4 A:TBR201 4.2 64.7 0.6

Tantalum binding site 3 out of 6 in 6otl

Go back to Tantalum Binding Sites List in 6otl
Tantalum binding site 3 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:78.7
occ:0.83
TA3 A:TBR201 0.0 78.7 0.8
BR5 A:TBR201 2.6 70.5 0.7
BR6 A:TBR201 2.6 69.6 0.5
BRA A:TBR201 2.6 73.9 0.6
BR2 A:TBR201 2.6 67.5 0.7
TA5 A:TBR201 2.9 78.2 0.8
TA4 A:TBR201 2.9 78.7 0.8
TA1 A:TBR201 3.0 68.3 0.7
TA2 A:TBR201 3.0 68.3 0.8
BR9 A:TBR201 4.1 70.3 0.6
TA6 A:TBR201 4.2 76.9 0.8
BR3 A:TBR201 4.2 69.3 0.6
BR1 A:TBR201 4.2 65.8 0.6
BR7 A:TBR201 4.2 74.3 0.5

Tantalum binding site 4 out of 6 in 6otl

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Tantalum binding site 4 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:78.7
occ:0.77
TA4 A:TBR201 0.0 78.7 0.8
BR8 A:TBR201 2.6 72.4 0.5
BRA A:TBR201 2.6 73.9 0.6
BR9 A:TBR201 2.6 70.3 0.6
BR7 A:TBR201 2.6 74.3 0.5
TA5 A:TBR201 2.9 78.2 0.8
TA2 A:TBR201 2.9 68.3 0.8
TA3 A:TBR201 2.9 78.7 0.8
TA6 A:TBR201 2.9 76.9 0.8
BRC A:TBR201 4.1 61.9 0.6
BR6 A:TBR201 4.2 69.6 0.5
TA1 A:TBR201 4.2 68.3 0.7
BR5 A:TBR201 4.2 70.5 0.7
BRB A:TBR201 4.2 73.1 0.6

Tantalum binding site 5 out of 6 in 6otl

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Tantalum binding site 5 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:78.2
occ:0.80
TA5 A:TBR201 0.0 78.2 0.8
BR7 A:TBR201 2.6 74.3 0.5
BR6 A:TBR201 2.6 69.6 0.5
BR3 A:TBR201 2.6 69.3 0.6
BRB A:TBR201 2.6 73.1 0.6
TA3 A:TBR201 2.9 78.7 0.8
TA4 A:TBR201 2.9 78.7 0.8
TA6 A:TBR201 2.9 76.9 0.8
TA1 A:TBR201 3.0 68.3 0.7
BR4 A:TBR201 4.1 64.7 0.6
TA2 A:TBR201 4.1 68.3 0.8
BRA A:TBR201 4.2 73.9 0.6
BR2 A:TBR201 4.2 67.5 0.7
BR8 A:TBR201 4.2 72.4 0.5

Tantalum binding site 6 out of 6 in 6otl

Go back to Tantalum Binding Sites List in 6otl
Tantalum binding site 6 out of 6 in the Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:76.9
occ:0.84
TA6 A:TBR201 0.0 76.9 0.8
BR4 A:TBR201 2.6 64.7 0.6
BRB A:TBR201 2.6 73.1 0.6
BRC A:TBR201 2.6 61.9 0.6
BR8 A:TBR201 2.6 72.4 0.5
TA2 A:TBR201 2.9 68.3 0.8
TA1 A:TBR201 2.9 68.3 0.7
TA4 A:TBR201 2.9 78.7 0.8
TA5 A:TBR201 2.9 78.2 0.8
BR3 A:TBR201 4.1 69.3 0.6
BR7 A:TBR201 4.1 74.3 0.5
TA3 A:TBR201 4.2 78.7 0.8
BR1 A:TBR201 4.2 65.8 0.6
BR9 A:TBR201 4.3 70.3 0.6

Reference:

D.N.Jones, E.Murphy. Structure of Aedes Aegypti OBP22 in the Complex with Benzaldehyde To Be Published.
Page generated: Wed Dec 16 02:26:18 2020

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