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Tantalum in PDB 6m97: Crystal Structure of the High-Affinity Copper Transporter CTR1

Protein crystallography data

The structure of Crystal Structure of the High-Affinity Copper Transporter CTR1, PDB code: 6m97 was solved by F.Ren, P.Yuan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 3.03
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 73.850, 73.850, 410.580, 90.00, 90.00, 120.00
R / Rfree (%) 28 / 33.2

Other elements in 6m97:

The structure of Crystal Structure of the High-Affinity Copper Transporter CTR1 also contains other interesting chemical elements:

Bromine (Br) 24 atoms
Zinc (Zn) 1 atom

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of the High-Affinity Copper Transporter CTR1 (pdb code 6m97). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 12 binding sites of Tantalum where determined in the Crystal Structure of the High-Affinity Copper Transporter CTR1, PDB code: 6m97:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 12 in 6m97

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Tantalum binding site 1 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:81.8
occ:0.50
TA1 A:TBR2001 0.0 81.8 0.5
BR3 A:TBR2001 2.6 79.9 0.5
BR2 A:TBR2001 2.6 84.0 0.5
BR1 A:TBR2001 2.6 84.1 0.5
BR4 A:TBR2001 2.6 83.8 0.5
TA5 A:TBR2001 2.9 81.4 0.5
TA2 A:TBR2001 2.9 81.1 0.5
TA6 A:TBR2001 2.9 82.1 0.5
TA3 A:TBR2001 2.9 81.3 0.5
TA4 A:TBR2001 4.1 82.0 0.5
BRB A:TBR2001 4.2 82.1 0.5
BRC A:TBR2001 4.2 82.7 0.5
BR6 A:TBR2001 4.2 81.6 0.5
BR5 A:TBR2001 4.2 83.1 0.5

Tantalum binding site 2 out of 12 in 6m97

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Tantalum binding site 2 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:81.1
occ:0.50
TA2 A:TBR2001 0.0 81.1 0.5
BRC A:TBR2001 2.6 82.7 0.5
BR5 A:TBR2001 2.6 83.1 0.5
BR1 A:TBR2001 2.6 84.1 0.5
BR9 A:TBR2001 2.6 81.9 0.5
TA4 A:TBR2001 2.9 82.0 0.5
TA1 A:TBR2001 2.9 81.8 0.5
TA3 A:TBR2001 2.9 81.3 0.5
TA6 A:TBR2001 2.9 82.1 0.5
TA5 A:TBR2001 4.1 81.4 0.5
BRA A:TBR2001 4.2 84.2 0.5
BR4 A:TBR2001 4.2 83.8 0.5
BR2 A:TBR2001 4.2 84.0 0.5
BR8 A:TBR2001 4.2 84.1 0.5

Tantalum binding site 3 out of 12 in 6m97

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Tantalum binding site 3 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:81.3
occ:0.50
TA3 A:TBR2001 0.0 81.3 0.5
BR6 A:TBR2001 2.6 81.6 0.5
BRA A:TBR2001 2.6 84.2 0.5
BR5 A:TBR2001 2.6 83.1 0.5
BR2 A:TBR2001 2.6 84.0 0.5
TA2 A:TBR2001 2.9 81.1 0.5
TA4 A:TBR2001 2.9 82.0 0.5
TA5 A:TBR2001 2.9 81.4 0.5
TA1 A:TBR2001 2.9 81.8 0.5
BR1 A:TBR2001 4.2 84.1 0.5
BR9 A:TBR2001 4.2 81.9 0.5
TA6 A:TBR2001 4.2 82.1 0.5
BR3 A:TBR2001 4.2 79.9 0.5
BR7 A:TBR2001 4.2 83.5 0.5

Tantalum binding site 4 out of 12 in 6m97

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Tantalum binding site 4 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:82.0
occ:0.50
TA4 A:TBR2001 0.0 82.0 0.5
BR9 A:TBR2001 2.6 81.9 0.5
BR8 A:TBR2001 2.6 84.1 0.5
BR7 A:TBR2001 2.6 83.5 0.5
BRA A:TBR2001 2.6 84.2 0.5
TA2 A:TBR2001 2.9 81.1 0.5
TA5 A:TBR2001 2.9 81.4 0.5
TA3 A:TBR2001 2.9 81.3 0.5
TA6 A:TBR2001 2.9 82.1 0.5
TA1 A:TBR2001 4.1 81.8 0.5
BRC A:TBR2001 4.2 82.7 0.5
BR6 A:TBR2001 4.2 81.6 0.5
BRB A:TBR2001 4.2 82.1 0.5
BR5 A:TBR2001 4.2 83.1 0.5

Tantalum binding site 5 out of 12 in 6m97

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Tantalum binding site 5 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:81.4
occ:0.50
TA5 A:TBR2001 0.0 81.4 0.5
BR6 A:TBR2001 2.6 81.6 0.5
BRB A:TBR2001 2.6 82.1 0.5
BR3 A:TBR2001 2.6 79.9 0.5
BR7 A:TBR2001 2.6 83.5 0.5
TA4 A:TBR2001 2.9 82.0 0.5
TA1 A:TBR2001 2.9 81.8 0.5
TA6 A:TBR2001 2.9 82.1 0.5
TA3 A:TBR2001 2.9 81.3 0.5
BR8 A:TBR2001 4.1 84.1 0.5
TA2 A:TBR2001 4.1 81.1 0.5
BR2 A:TBR2001 4.2 84.0 0.5
BR4 A:TBR2001 4.2 83.8 0.5
BRA A:TBR2001 4.2 84.2 0.5
CD2 A:HIS1063 5.0 88.4 1.0

Tantalum binding site 6 out of 12 in 6m97

Go back to Tantalum Binding Sites List in 6m97
Tantalum binding site 6 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2001

b:82.1
occ:0.50
TA6 A:TBR2001 0.0 82.1 0.5
BR4 A:TBR2001 2.6 83.8 0.5
BRC A:TBR2001 2.6 82.7 0.5
BR8 A:TBR2001 2.6 84.1 0.5
BRB A:TBR2001 2.6 82.1 0.5
TA1 A:TBR2001 2.9 81.8 0.5
TA5 A:TBR2001 2.9 81.4 0.5
TA4 A:TBR2001 2.9 82.0 0.5
TA2 A:TBR2001 2.9 81.1 0.5
OD2 A:ASP1060 4.0 0.1 1.0
BR3 A:TBR2001 4.1 79.9 0.5
BR7 A:TBR2001 4.2 83.5 0.5
TA3 A:TBR2001 4.2 81.3 0.5
BR9 A:TBR2001 4.2 81.9 0.5
BR1 A:TBR2001 4.2 84.1 0.5
CG A:ASP1060 4.3 0.3 1.0
OD1 A:ASP1060 4.7 98.5 1.0
CA A:ASP1060 4.8 94.8 1.0
CB A:ASP1060 4.8 97.9 1.0

Tantalum binding site 7 out of 12 in 6m97

Go back to Tantalum Binding Sites List in 6m97
Tantalum binding site 7 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2002

b:0.0
occ:0.20
TA1 A:TBR2002 0.0 0.0 0.2
BR3 A:TBR2002 2.6 0.4 0.2
BR2 A:TBR2002 2.6 0.3 0.2
BR1 A:TBR2002 2.6 0.0 0.2
BR4 A:TBR2002 2.6 0.1 0.2
TA5 A:TBR2002 2.9 0.8 0.2
TA2 A:TBR2002 2.9 0.5 0.2
TA3 A:TBR2002 2.9 0.3 0.2
TA6 A:TBR2002 2.9 0.2 0.2
TA4 A:TBR2002 4.1 0.4 0.2
BR6 A:TBR2002 4.1 0.6 0.2
BR5 A:TBR2002 4.2 0.7 0.2
BRB A:TBR2002 4.2 0.8 0.2
BRC A:TBR2002 4.2 0.7 0.2
OD2 A:ASP1073 4.3 97.2 1.0

Tantalum binding site 8 out of 12 in 6m97

Go back to Tantalum Binding Sites List in 6m97
Tantalum binding site 8 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2002

b:0.5
occ:0.20
TA2 A:TBR2002 0.0 0.5 0.2
BRC A:TBR2002 2.6 0.7 0.2
BR5 A:TBR2002 2.6 0.7 0.2
BR9 A:TBR2002 2.6 0.5 0.2
BR1 A:TBR2002 2.6 0.0 0.2
TA4 A:TBR2002 2.9 0.4 0.2
TA1 A:TBR2002 2.9 0.0 0.2
TA3 A:TBR2002 2.9 0.3 0.2
TA6 A:TBR2002 2.9 0.2 0.2
TA5 A:TBR2002 4.1 0.8 0.2
BRA A:TBR2002 4.1 1.0 0.2
BR2 A:TBR2002 4.2 0.3 0.2
BR4 A:TBR2002 4.2 0.1 0.2
BR8 A:TBR2002 4.2 0.3 0.2

Tantalum binding site 9 out of 12 in 6m97

Go back to Tantalum Binding Sites List in 6m97
Tantalum binding site 9 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2002

b:0.3
occ:0.20
TA3 A:TBR2002 0.0 0.3 0.2
BRA A:TBR2002 2.6 1.0 0.2
BR6 A:TBR2002 2.6 0.6 0.2
BR5 A:TBR2002 2.6 0.7 0.2
BR2 A:TBR2002 2.6 0.3 0.2
TA2 A:TBR2002 2.9 0.5 0.2
TA1 A:TBR2002 2.9 0.0 0.2
TA4 A:TBR2002 2.9 0.4 0.2
TA5 A:TBR2002 2.9 0.8 0.2
BR1 A:TBR2002 4.2 0.0 0.2
BR3 A:TBR2002 4.2 0.4 0.2
TA6 A:TBR2002 4.2 0.2 0.2
BR9 A:TBR2002 4.2 0.5 0.2
BR7 A:TBR2002 4.2 1.0 0.2

Tantalum binding site 10 out of 12 in 6m97

Go back to Tantalum Binding Sites List in 6m97
Tantalum binding site 10 out of 12 in the Crystal Structure of the High-Affinity Copper Transporter CTR1


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of the High-Affinity Copper Transporter CTR1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2002

b:0.4
occ:0.20
TA4 A:TBR2002 0.0 0.4 0.2
BR9 A:TBR2002 2.6 0.5 0.2
BR8 A:TBR2002 2.6 0.3 0.2
BRA A:TBR2002 2.6 1.0 0.2
BR7 A:TBR2002 2.6 1.0 0.2
TA2 A:TBR2002 2.9 0.5 0.2
TA5 A:TBR2002 2.9 0.8 0.2
TA6 A:TBR2002 2.9 0.2 0.2
TA3 A:TBR2002 2.9 0.3 0.2
TA1 A:TBR2002 4.1 0.0 0.2
BRC A:TBR2002 4.1 0.7 0.2
BR6 A:TBR2002 4.2 0.6 0.2
BR5 A:TBR2002 4.2 0.7 0.2
BRB A:TBR2002 4.2 0.8 0.2

Reference:

F.Ren, B.L.Logeman, X.Zhang, Y.Liu, D.J.Thiele, P.Yuan. X-Ray Structures of the High-Affinity Copper Transporter CTR1. Nat Commun V. 10 1386 2019.
ISSN: ESSN 2041-1723
PubMed: 30918258
DOI: 10.1038/S41467-019-09376-7
Page generated: Wed Dec 16 02:26:19 2020

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