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Tantalum in PDB 5oar: Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae

Enzymatic activity of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae

All present enzymatic activity of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae:
3.2.1.52;

Protein crystallography data

The structure of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae, PDB code: 5oar was solved by J.Skerlova, P.Rezacova, J.Brynda, P.Pachl, Z.Otwinowski, O.Vanek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 23.37 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 105.752, 105.752, 285.807, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / 24.1

Other elements in 5oar:

The structure of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae also contains other interesting chemical elements:

Bromine (Br) 12 atoms
Chlorine (Cl) 12 atoms

Tantalum Binding Sites:

The binding sites of Tantalum atom in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae (pdb code 5oar). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 6 binding sites of Tantalum where determined in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae, PDB code: 5oar:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6;

Tantalum binding site 1 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 1 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:69.2
occ:0.30
 TA1 D:TBR705 0.0 69.2 0.3
BR3 D:TBR705 2.6 67.5 0.3
BR1 D:TBR705 2.6 80.7 0.3
BR4 D:TBR705 2.6 66.4 0.3
BR2 D:TBR705 2.6 74.3 0.3
TA5 D:TBR705 2.9 68.5 0.3
TA2 D:TBR705 2.9 77.3 0.3
TA6 D:TBR705 2.9 68.8 0.3
TA3 D:TBR705 2.9 78.5 0.3
BR6 D:TBR705 4.1 77.9 0.3
TA4 D:TBR705 4.1 74.5 0.3
BRB D:TBR705 4.1 64.8 0.3
BRC D:TBR705 4.2 69.1 0.3
BR5 D:TBR705 4.2 74.8 0.3

Tantalum binding site 2 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 2 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:77.3
occ:0.30
 TA2 D:TBR705 0.0 77.3 0.3
BRC D:TBR705 2.6 69.1 0.3
BR5 D:TBR705 2.6 74.8 0.3
BR1 D:TBR705 2.6 80.7 0.3
BR9 D:TBR705 2.6 74.1 0.3
TA4 D:TBR705 2.9 74.5 0.3
TA3 D:TBR705 2.9 78.5 0.3
TA1 D:TBR705 2.9 69.2 0.3
TA6 D:TBR705 2.9 68.8 0.3
TA5 D:TBR705 4.1 68.5 0.3
BRA D:TBR705 4.2 79.0 0.3
BR8 D:TBR705 4.2 73.2 0.3
BR2 D:TBR705 4.2 74.3 0.3
BR4 D:TBR705 4.2 66.4 0.3

Tantalum binding site 3 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 3 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:78.5
occ:0.30
 TA3 D:TBR705 0.0 78.5 0.3
BR6 D:TBR705 2.6 77.9 0.3
BR2 D:TBR705 2.6 74.3 0.3
BRA D:TBR705 2.6 79.0 0.3
BR5 D:TBR705 2.6 74.8 0.3
TA4 D:TBR705 2.9 74.5 0.3
TA2 D:TBR705 2.9 77.3 0.3
TA1 D:TBR705 2.9 69.2 0.3
TA5 D:TBR705 3.0 68.5 0.3
BR1 D:TBR705 4.1 80.7 0.3
BR9 D:TBR705 4.2 74.1 0.3
BR3 D:TBR705 4.2 67.5 0.3
TA6 D:TBR705 4.2 68.8 0.3
BR7 D:TBR705 4.2 78.0 0.3
OE1 D:GLU322 4.7 0.1 1.0

Tantalum binding site 4 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 4 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:74.5
occ:0.30
 TA4 D:TBR705 0.0 74.5 0.3
BR8 D:TBR705 2.6 73.2 0.3
BR9 D:TBR705 2.6 74.1 0.3
BR7 D:TBR705 2.6 78.0 0.3
BRA D:TBR705 2.6 79.0 0.3
TA2 D:TBR705 2.9 77.3 0.3
TA3 D:TBR705 2.9 78.5 0.3
TA5 D:TBR705 2.9 68.5 0.3
TA6 D:TBR705 3.0 68.8 0.3
TA1 D:TBR705 4.1 69.2 0.3
BRC D:TBR705 4.1 69.1 0.3
BR5 D:TBR705 4.1 74.8 0.3
BR6 D:TBR705 4.2 77.9 0.3
BRB D:TBR705 4.2 64.8 0.3

Tantalum binding site 5 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 5 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:68.5
occ:0.30
 TA5 D:TBR705 0.0 68.5 0.3
BR6 D:TBR705 2.6 77.9 0.3
BR7 D:TBR705 2.6 78.0 0.3
BRB D:TBR705 2.6 64.8 0.3
BR3 D:TBR705 2.6 67.5 0.3
TA1 D:TBR705 2.9 69.2 0.3
TA4 D:TBR705 2.9 74.5 0.3
TA6 D:TBR705 2.9 68.8 0.3
TA3 D:TBR705 3.0 78.5 0.3
BR4 D:TBR705 4.1 66.4 0.3
TA2 D:TBR705 4.1 77.3 0.3
BR2 D:TBR705 4.2 74.3 0.3
BR8 D:TBR705 4.2 73.2 0.3
BRA D:TBR705 4.2 79.0 0.3
O D:ASN318 4.2 0.1 1.0

Tantalum binding site 6 out of 6 in 5oar

Go back to Tantalum Binding Sites List in 5oar
Tantalum binding site 6 out of 6 in the Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta705

b:68.8
occ:0.30
 TA6 D:TBR705 0.0 68.8 0.3
BR4 D:TBR705 2.6 66.4 0.3
BRC D:TBR705 2.6 69.1 0.3
BRB D:TBR705 2.6 64.8 0.3
BR8 D:TBR705 2.6 73.2 0.3
TA1 D:TBR705 2.9 69.2 0.3
TA5 D:TBR705 2.9 68.5 0.3
TA2 D:TBR705 2.9 77.3 0.3
TA4 D:TBR705 3.0 74.5 0.3
BR7 D:TBR705 4.1 78.0 0.3
TA3 D:TBR705 4.2 78.5 0.3
BR3 D:TBR705 4.2 67.5 0.3
BR9 D:TBR705 4.2 74.1 0.3
BR1 D:TBR705 4.2 80.7 0.3

Reference:

J.Skerlova, J.Blaha, P.Pachl, K.Hofbauerova, Z.Kukacka, P.Man, P.Pompach, P.Novak, Z.Otwinowski, J.Brynda, O.Vanek, P.Rezacova. Crystal Structure of Native Beta-N-Acetylhexosaminidase Isolated From Aspergillus Oryzae Sheds Light Onto Its Substrate Specificity, High Stability, and Regulation By Propeptide. Febs J. V. 285 580 2018.
ISSN: ISSN 1742-4658
PubMed: 29239122
DOI: 10.1111/FEBS.14360
Page generated: Wed Dec 16 02:26:19 2020

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