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Tantalum in PDB 4zc0: Structure of A Dodecameric Bacterial Helicase

Enzymatic activity of Structure of A Dodecameric Bacterial Helicase

All present enzymatic activity of Structure of A Dodecameric Bacterial Helicase:
3.6.4.12;

Protein crystallography data

The structure of Structure of A Dodecameric Bacterial Helicase, PDB code: 4zc0 was solved by A.Bazin, M.V.Cherrier, I.Gutsche, J.Timmins, L.Terradot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.25 / 6.70
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 283.467, 283.467, 283.467, 90.00, 90.00, 90.00
R / Rfree (%) 25.8 / 29.9

Other elements in 4zc0:

The structure of Structure of A Dodecameric Bacterial Helicase also contains other interesting chemical elements:

Bromine (Br) 12 atoms

Tantalum Binding Sites:

The binding sites of Tantalum atom in the Structure of A Dodecameric Bacterial Helicase (pdb code 4zc0). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 6 binding sites of Tantalum where determined in the Structure of A Dodecameric Bacterial Helicase, PDB code: 4zc0:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6;

Tantalum binding site 1 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 1 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA1 B:TBR501 0.0 0.0 0.5
BR3 B:TBR501 2.6 0.0 0.5
BR2 B:TBR501 2.6 0.0 0.5
BR1 B:TBR501 2.6 0.0 0.5
BR4 B:TBR501 2.6 0.0 0.5
TA5 B:TBR501 2.9 0.0 0.5
TA2 B:TBR501 2.9 0.0 0.5
TA6 B:TBR501 2.9 0.0 0.5
TA3 B:TBR501 2.9 0.0 0.5
TA4 B:TBR501 4.1 0.0 0.5
BR6 B:TBR501 4.1 0.0 0.5
BRC B:TBR501 4.2 0.0 0.5
BRB B:TBR501 4.2 0.0 0.5
BR5 B:TBR501 4.2 0.0 0.5

Tantalum binding site 2 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 2 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA2 B:TBR501 0.0 0.0 0.5
BRC B:TBR501 2.6 0.0 0.5
BR5 B:TBR501 2.6 0.0 0.5
BR9 B:TBR501 2.6 0.0 0.5
BR1 B:TBR501 2.6 0.0 0.5
TA4 B:TBR501 2.9 0.0 0.5
TA1 B:TBR501 2.9 0.0 0.5
TA3 B:TBR501 2.9 0.0 0.5
TA6 B:TBR501 2.9 0.0 0.5
TA5 B:TBR501 4.1 0.0 0.5
BRA B:TBR501 4.1 0.0 0.5
BR2 B:TBR501 4.2 0.0 0.5
BR4 B:TBR501 4.2 0.0 0.5
BR8 B:TBR501 4.2 0.0 0.5
OE2 B:GLU50 4.3 0.7 1.0
CB B:PRO37 4.7 0.7 1.0
N B:SER38 4.7 0.4 1.0
CA B:SER38 4.8 0.4 1.0
C B:PRO37 4.8 0.7 1.0
O B:PRO37 4.8 0.7 1.0
CD1 B:LEU47 4.8 0.1 1.0

Tantalum binding site 3 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 3 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA3 B:TBR501 0.0 0.0 0.5
BRA B:TBR501 2.6 0.0 0.5
BR6 B:TBR501 2.6 0.0 0.5
BR5 B:TBR501 2.6 0.0 0.5
BR2 B:TBR501 2.6 0.0 0.5
TA2 B:TBR501 2.9 0.0 0.5
TA4 B:TBR501 2.9 0.0 0.5
TA1 B:TBR501 2.9 0.0 0.5
TA5 B:TBR501 2.9 0.0 0.5
BR1 B:TBR501 4.2 0.0 0.5
BR9 B:TBR501 4.2 0.0 0.5
BR3 B:TBR501 4.2 0.0 0.5
TA6 B:TBR501 4.2 0.0 0.5
BR7 B:TBR501 4.2 0.0 0.5
OE2 B:GLU50 4.8 0.7 1.0

Tantalum binding site 4 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 4 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA4 B:TBR501 0.0 0.0 0.5
BR9 B:TBR501 2.6 0.0 0.5
BR8 B:TBR501 2.6 0.0 0.5
BR7 B:TBR501 2.6 0.0 0.5
BRA B:TBR501 2.6 0.0 0.5
CD1 B:LEU47 2.8 0.1 1.0
TA2 B:TBR501 2.9 0.0 0.5
TA5 B:TBR501 2.9 0.0 0.5
TA3 B:TBR501 2.9 0.0 0.5
TA6 B:TBR501 2.9 0.0 0.5
CG B:LEU47 3.0 0.1 1.0
CD2 B:LEU47 3.2 0.1 1.0
TA1 B:TBR501 4.1 0.0 0.5
BRC B:TBR501 4.1 0.0 0.5
BR6 B:TBR501 4.2 0.0 0.5
BR5 B:TBR501 4.2 0.0 0.5
BRB B:TBR501 4.2 0.0 0.5
CB B:LEU47 4.4 0.1 1.0
OE1 B:GLU50 4.8 0.7 1.0
CA B:LEU47 5.0 0.1 1.0

Tantalum binding site 5 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 5 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA5 B:TBR501 0.0 0.0 0.5
BR6 B:TBR501 2.6 0.0 0.5
BRB B:TBR501 2.6 0.0 0.5
BR7 B:TBR501 2.6 0.0 0.5
BR3 B:TBR501 2.6 0.0 0.5
TA1 B:TBR501 2.9 0.0 0.5
TA4 B:TBR501 2.9 0.0 0.5
TA6 B:TBR501 2.9 0.0 0.5
TA3 B:TBR501 2.9 0.0 0.5
TA2 B:TBR501 4.1 0.0 0.5
BR4 B:TBR501 4.2 0.0 0.5
BR8 B:TBR501 4.2 0.0 0.5
BR2 B:TBR501 4.2 0.0 0.5
BRA B:TBR501 4.2 0.0 0.5

Tantalum binding site 6 out of 6 in 4zc0

Go back to Tantalum Binding Sites List in 4zc0
Tantalum binding site 6 out of 6 in the Structure of A Dodecameric Bacterial Helicase


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Structure of A Dodecameric Bacterial Helicase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta501

b:0.0
occ:0.49
 TA6 B:TBR501 0.0 0.0 0.5
BR4 B:TBR501 2.6 0.0 0.5
BRC B:TBR501 2.6 0.0 0.5
BRB B:TBR501 2.6 0.0 0.5
BR8 B:TBR501 2.6 0.0 0.5
TA5 B:TBR501 2.9 0.0 0.5
TA1 B:TBR501 2.9 0.0 0.5
TA4 B:TBR501 2.9 0.0 0.5
TA2 B:TBR501 2.9 0.0 0.5
CD1 B:LEU47 4.0 0.1 1.0
BR7 B:TBR501 4.2 0.0 0.5
BR3 B:TBR501 4.2 0.0 0.5
BR9 B:TBR501 4.2 0.0 0.5
TA3 B:TBR501 4.2 0.0 0.5
BR1 B:TBR501 4.2 0.0 0.5

Reference:

A.Bazin, M.V.Cherrier, I.Gutsche, J.Timmins, L.Terradot. Structure and Primase-Mediated Activation of A Bacterial Dodecameric Replicative Helicase. Nucleic Acids Res. V. 43 8564 2015.
ISSN: ESSN 1362-4962
PubMed: 26264665
DOI: 10.1093/NAR/GKV792
Page generated: Fri Oct 11 07:58:39 2024

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