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Tantalum in PDB 4lvp: Crystal Structure of IFT81 N-Terminal Domain

Protein crystallography data

The structure of Crystal Structure of IFT81 N-Terminal Domain, PDB code: 4lvp was solved by S.Bhogaraju, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.28 / 2.32
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 76.066, 76.066, 94.063, 90.00, 90.00, 120.00
R / Rfree (%) 21.4 / 23.9

Tantalum Binding Sites:

The binding sites of Tantalum atom in the Crystal Structure of IFT81 N-Terminal Domain (pdb code 4lvp). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 4 binding sites of Tantalum where determined in the Crystal Structure of IFT81 N-Terminal Domain, PDB code: 4lvp:
Jump to Tantalum binding site number: 1; 2; 3; 4;

Tantalum binding site 1 out of 4 in 4lvp

Go back to Tantalum Binding Sites List in 4lvp
Tantalum binding site 1 out of 4 in the Crystal Structure of IFT81 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of IFT81 N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta201

b:84.8
occ:0.25
TA A:TA0204 2.7 0.9 0.2
OE1 A:GLU111 3.3 64.3 1.0
O A:THR43 4.3 43.1 1.0
TA A:TA0203 4.5 87.0 0.2
CD A:GLU111 4.5 57.0 1.0

Tantalum binding site 2 out of 4 in 4lvp

Go back to Tantalum Binding Sites List in 4lvp
Tantalum binding site 2 out of 4 in the Crystal Structure of IFT81 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of IFT81 N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta202

b:78.5
occ:0.27
OD2 A:ASP124 2.8 74.2 1.0
CG A:ASP124 3.9 70.5 1.0
O A:ASP124 4.2 85.8 1.0
OD1 A:ASP124 4.3 77.1 1.0

Tantalum binding site 3 out of 4 in 4lvp

Go back to Tantalum Binding Sites List in 4lvp
Tantalum binding site 3 out of 4 in the Crystal Structure of IFT81 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of IFT81 N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta203

b:87.0
occ:0.21
OE1 A:GLU111 2.9 64.3 1.0
OE2 A:GLU111 3.0 67.6 1.0
CD A:GLU111 3.3 57.0 1.0
CB A:PRO15 3.9 37.4 1.0
CA A:PRO15 4.3 42.2 1.0
TA A:TA0201 4.5 84.8 0.2
CG A:GLU111 4.8 37.0 1.0
O A:PRO15 4.9 52.6 1.0

Tantalum binding site 4 out of 4 in 4lvp

Go back to Tantalum Binding Sites List in 4lvp
Tantalum binding site 4 out of 4 in the Crystal Structure of IFT81 N-Terminal Domain


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of IFT81 N-Terminal Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta204

b:0.9
occ:0.23
TA A:TA0201 2.7 84.8 0.2
OH A:TYR119 3.8 61.0 1.0
CB A:PRO46 4.2 72.5 1.0
CA A:PRO46 4.8 79.5 1.0

Reference:

S.Bhogaraju, L.Cajanek, C.Fort, T.Blisnick, K.Weber, M.Taschner, N.Mizuno, S.Lamla, P.Bastin, E.A.Nigg, E.Lorentzen. Molecular Basis of Tubulin Transport Within the Cilium By IFT74 and IFT81. Science V. 341 1009 2013.
ISSN: ISSN 0036-8075
PubMed: 23990561
DOI: 10.1126/SCIENCE.1240985
Page generated: Wed Dec 16 02:26:14 2020

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