Atomistry » Thallium » PDB 1dd4-6otl » 4j9u
Atomistry »
  Thallium »
    PDB 1dd4-6otl »
      4j9u »

Tantalum in PDB 4j9u: Crystal Structure of the Trkh/Trka Potassium Transport Complex

Protein crystallography data

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u was solved by Y.Cao, X.Jin, H.Huang, E.J.Levin, M.Zhou, New York Consortium On Membraneprotein Structure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.79 / 3.80
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 133.725, 146.627, 163.672, 90.00, 99.32, 90.00
R / Rfree (%) 23.2 / 28

Other elements in 4j9u:

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex also contains other interesting chemical elements:

Bromine (Br) 216 atoms
Potassium (K) 4 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 108;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of the Trkh/Trka Potassium Transport Complex (pdb code 4j9u). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 108 binding sites of Tantalum where determined in the Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 1 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:0.3
occ:0.45
TA1 A:TBR501 0.0 0.3 0.5
BR3 A:TBR501 2.6 0.6 0.5
BR2 A:TBR501 2.6 0.4 0.5
BR1 A:TBR501 2.6 0.4 0.5
BR4 A:TBR501 2.6 0.5 0.5
TA5 A:TBR501 2.9 0.7 0.5
TA2 A:TBR501 2.9 0.7 0.5
TA6 A:TBR501 2.9 0.4 0.5
TA3 A:TBR501 2.9 0.9 0.5
TA4 A:TBR501 4.1 86.5 0.5
BR6 A:TBR501 4.1 0.3 0.5
BRC A:TBR501 4.2 0.1 0.5
BRB A:TBR501 4.2 0.4 0.5
BR5 A:TBR501 4.2 91.3 0.5
NZ F:LYS42 4.8 93.0 1.0

Tantalum binding site 2 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 2 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:0.7
occ:0.45
TA2 A:TBR501 0.0 0.7 0.5
BRC A:TBR501 2.6 0.1 0.5
BR5 A:TBR501 2.6 91.3 0.5
BR9 A:TBR501 2.6 0.4 0.5
BR1 A:TBR501 2.6 0.4 0.5
TA4 A:TBR501 2.9 86.5 0.5
TA1 A:TBR501 2.9 0.3 0.5
TA3 A:TBR501 2.9 0.9 0.5
TA6 A:TBR501 2.9 0.4 0.5
TA5 A:TBR501 4.1 0.7 0.5
BRA A:TBR501 4.1 0.5 0.5
BR4 A:TBR501 4.2 0.5 0.5
BR2 A:TBR501 4.2 0.4 0.5
BR8 A:TBR501 4.2 0.3 0.5

Tantalum binding site 3 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 3 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:0.9
occ:0.45
TA3 A:TBR501 0.0 0.9 0.5
BRA A:TBR501 2.6 0.5 0.5
BR6 A:TBR501 2.6 0.3 0.5
BR5 A:TBR501 2.6 91.3 0.5
BR2 A:TBR501 2.6 0.4 0.5
TA2 A:TBR501 2.9 0.7 0.5
TA4 A:TBR501 2.9 86.5 0.5
TA5 A:TBR501 2.9 0.7 0.5
TA1 A:TBR501 2.9 0.3 0.5
BR1 A:TBR501 4.1 0.4 0.5
TA6 A:TBR501 4.2 0.4 0.5
BR3 A:TBR501 4.2 0.6 0.5
BR9 A:TBR501 4.2 0.4 0.5
BR7 A:TBR501 4.2 0.5 0.5

Tantalum binding site 4 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 4 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:86.5
occ:0.45
TA4 A:TBR501 0.0 86.5 0.5
BR9 A:TBR501 2.6 0.4 0.5
BR8 A:TBR501 2.6 0.3 0.5
BR7 A:TBR501 2.6 0.5 0.5
BRA A:TBR501 2.6 0.5 0.5
TA2 A:TBR501 2.9 0.7 0.5
TA5 A:TBR501 2.9 0.7 0.5
TA3 A:TBR501 2.9 0.9 0.5
TA6 A:TBR501 2.9 0.4 0.5
O A:PRO151 3.8 94.1 1.0
BRC A:TBR501 4.1 0.1 0.5
TA1 A:TBR501 4.1 0.3 0.5
BR5 A:TBR501 4.1 91.3 0.5
BRB A:TBR501 4.1 0.4 0.5
BR6 A:TBR501 4.2 0.3 0.5
C A:PRO151 5.0 80.7 1.0

Tantalum binding site 5 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 5 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:0.7
occ:0.45
TA5 A:TBR501 0.0 0.7 0.5
BR6 A:TBR501 2.6 0.3 0.5
BRB A:TBR501 2.6 0.4 0.5
BR3 A:TBR501 2.6 0.6 0.5
BR7 A:TBR501 2.6 0.5 0.5
TA1 A:TBR501 2.9 0.3 0.5
TA4 A:TBR501 2.9 86.5 0.5
TA6 A:TBR501 2.9 0.4 0.5
TA3 A:TBR501 2.9 0.9 0.5
TA2 A:TBR501 4.1 0.7 0.5
BR8 A:TBR501 4.1 0.3 0.5
BR2 A:TBR501 4.1 0.4 0.5
BR4 A:TBR501 4.1 0.5 0.5
BRA A:TBR501 4.2 0.5 0.5

Tantalum binding site 6 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 6 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta501

b:0.4
occ:0.45
TA6 A:TBR501 0.0 0.4 0.5
BR4 A:TBR501 2.6 0.5 0.5
BRC A:TBR501 2.6 0.1 0.5
BRB A:TBR501 2.6 0.4 0.5
BR8 A:TBR501 2.6 0.3 0.5
TA5 A:TBR501 2.9 0.7 0.5
TA1 A:TBR501 2.9 0.3 0.5
TA4 A:TBR501 2.9 86.5 0.5
TA2 A:TBR501 2.9 0.7 0.5
BR3 A:TBR501 4.2 0.6 0.5
TA3 A:TBR501 4.2 0.9 0.5
BR9 A:TBR501 4.2 0.4 0.5
BR7 A:TBR501 4.2 0.5 0.5
BR1 A:TBR501 4.2 0.4 0.5
O F:ASP41 4.5 0.2 1.0

Tantalum binding site 7 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 7 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta502

b:0.6
occ:0.35
TA1 A:TBR502 0.0 0.6 0.4
BR3 A:TBR502 2.6 0.4 0.4
BR2 A:TBR502 2.6 0.2 0.4
BR1 A:TBR502 2.6 0.1 0.4
BR4 A:TBR502 2.6 86.5 0.3
TA5 A:TBR502 2.9 1.0 0.4
TA2 A:TBR502 2.9 0.1 0.4
TA6 A:TBR502 2.9 0.1 0.4
TA3 A:TBR502 2.9 0.7 0.4
TA4 A:TBR502 4.1 0.7 0.4
BR6 A:TBR502 4.1 0.7 0.4
BRC A:TBR502 4.2 0.7 0.4
BR5 A:TBR502 4.2 0.9 0.4
BRB A:TBR502 4.2 0.9 0.4

Tantalum binding site 8 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 8 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta502

b:0.1
occ:0.35
TA2 A:TBR502 0.0 0.1 0.4
BRC A:TBR502 2.6 0.7 0.4
BR5 A:TBR502 2.6 0.9 0.4
BR9 A:TBR502 2.6 90.5 0.3
BR1 A:TBR502 2.6 0.1 0.4
TA4 A:TBR502 2.9 0.7 0.4
TA1 A:TBR502 2.9 0.6 0.4
TA3 A:TBR502 2.9 0.7 0.4
TA6 A:TBR502 2.9 0.1 0.4
TA5 A:TBR502 4.1 1.0 0.4
BR2 A:TBR502 4.1 0.2 0.4
BRA A:TBR502 4.1 1.0 0.4
BR4 A:TBR502 4.2 86.5 0.3
BR8 A:TBR502 4.2 0.6 0.4

Tantalum binding site 9 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 9 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta502

b:0.7
occ:0.35
TA3 A:TBR502 0.0 0.7 0.4
BRA A:TBR502 2.6 1.0 0.4
BR6 A:TBR502 2.6 0.7 0.4
BR5 A:TBR502 2.6 0.9 0.4
BR2 A:TBR502 2.6 0.2 0.4
TA2 A:TBR502 2.9 0.1 0.4
TA4 A:TBR502 2.9 0.7 0.4
TA1 A:TBR502 2.9 0.6 0.4
TA5 A:TBR502 2.9 1.0 0.4
CD1 A:LEU150 4.1 80.9 1.0
BR1 A:TBR502 4.1 0.1 0.4
TA6 A:TBR502 4.2 0.1 0.4
BR3 A:TBR502 4.2 0.4 0.4
BR9 A:TBR502 4.2 90.5 0.3
BR7 A:TBR502 4.2 0.5 0.4

Tantalum binding site 10 out of 108 in 4j9u

Go back to Tantalum Binding Sites List in 4j9u
Tantalum binding site 10 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta502

b:0.7
occ:0.35
TA4 A:TBR502 0.0 0.7 0.4
BR9 A:TBR502 2.6 90.5 0.3
BR8 A:TBR502 2.6 0.6 0.4
BR7 A:TBR502 2.6 0.5 0.4
BRA A:TBR502 2.6 1.0 0.4
TA2 A:TBR502 2.9 0.1 0.4
TA5 A:TBR502 2.9 1.0 0.4
TA3 A:TBR502 2.9 0.7 0.4
TA6 A:TBR502 2.9 0.1 0.4
BRC A:TBR502 4.1 0.7 0.4
TA1 A:TBR502 4.1 0.6 0.4
BR6 A:TBR502 4.1 0.7 0.4
BRB A:TBR502 4.1 0.9 0.4
BR5 A:TBR502 4.2 0.9 0.4

Reference:

Y.Cao, Y.Pan, H.Huang, X.Jin, E.J.Levin, B.Kloss, M.Zhou. Gating of the Trkh Ion Channel By Its Associated Rck Protein Trka. Nature V. 496 317 2013.
ISSN: ISSN 0028-0836
PubMed: 23598339
DOI: 10.1038/NATURE12056
Page generated: Wed Dec 16 02:26:22 2020

Last articles

Zn in 7RE3
Zn in 7RDX
Zn in 7RDZ
Zn in 7RWM
Zn in 7PGU
Zn in 7PGR
Zn in 7PGT
Zn in 7PGS
Zn in 7SQE
Zn in 7RWK
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy