Tantalum in PDB 4j9u: Crystal Structure of the Trkh/Trka Potassium Transport Complex

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u was solved by Y.Cao, X.Jin, H.Huang, E.J.Levin, M.Zhou, New York Consortium On Membraneprotein Structure (Nycomps), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.79 / 3.80
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	133.725, 146.627, 163.672, 90.00, 99.32, 90.00
R / Rfree (%)	23.2 / 28

The structure of Crystal Structure of the Trkh/Trka Potassium Transport Complex also contains other interesting chemical elements:

Bromine	(Br)	216 atoms
Potassium	(K)	4 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 100; Page 11, Binding sites: 101 - 108;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of the Trkh/Trka Potassium Transport Complex (pdb code 4j9u). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 108 binding sites of Tantalum where determined in the Crystal Structure of the Trkh/Trka Potassium Transport Complex, PDB code: 4j9u:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:0.3 occ:0.45 TA1 A:TBR501 0.0 0.3 0.5 BR3 A:TBR501 2.6 0.6 0.5 BR2 A:TBR501 2.6 0.4 0.5 BR1 A:TBR501 2.6 0.4 0.5 BR4 A:TBR501 2.6 0.5 0.5 TA5 A:TBR501 2.9 0.7 0.5 TA2 A:TBR501 2.9 0.7 0.5 TA6 A:TBR501 2.9 0.4 0.5 TA3 A:TBR501 2.9 0.9 0.5 TA4 A:TBR501 4.1 86.5 0.5 BR6 A:TBR501 4.1 0.3 0.5 BRC A:TBR501 4.2 0.1 0.5 BRB A:TBR501 4.2 0.4 0.5 BR5 A:TBR501 4.2 91.3 0.5 NZ F:LYS42 4.8 93.0 1.0

Tantalum binding site 2 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:0.7 occ:0.45 TA2 A:TBR501 0.0 0.7 0.5 BRC A:TBR501 2.6 0.1 0.5 BR5 A:TBR501 2.6 91.3 0.5 BR9 A:TBR501 2.6 0.4 0.5 BR1 A:TBR501 2.6 0.4 0.5 TA4 A:TBR501 2.9 86.5 0.5 TA1 A:TBR501 2.9 0.3 0.5 TA3 A:TBR501 2.9 0.9 0.5 TA6 A:TBR501 2.9 0.4 0.5 TA5 A:TBR501 4.1 0.7 0.5 BRA A:TBR501 4.1 0.5 0.5 BR4 A:TBR501 4.2 0.5 0.5 BR2 A:TBR501 4.2 0.4 0.5 BR8 A:TBR501 4.2 0.3 0.5

Tantalum binding site 3 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:0.9 occ:0.45 TA3 A:TBR501 0.0 0.9 0.5 BRA A:TBR501 2.6 0.5 0.5 BR6 A:TBR501 2.6 0.3 0.5 BR5 A:TBR501 2.6 91.3 0.5 BR2 A:TBR501 2.6 0.4 0.5 TA2 A:TBR501 2.9 0.7 0.5 TA4 A:TBR501 2.9 86.5 0.5 TA5 A:TBR501 2.9 0.7 0.5 TA1 A:TBR501 2.9 0.3 0.5 BR1 A:TBR501 4.1 0.4 0.5 TA6 A:TBR501 4.2 0.4 0.5 BR3 A:TBR501 4.2 0.6 0.5 BR9 A:TBR501 4.2 0.4 0.5 BR7 A:TBR501 4.2 0.5 0.5

Tantalum binding site 4 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:86.5 occ:0.45 TA4 A:TBR501 0.0 86.5 0.5 BR9 A:TBR501 2.6 0.4 0.5 BR8 A:TBR501 2.6 0.3 0.5 BR7 A:TBR501 2.6 0.5 0.5 BRA A:TBR501 2.6 0.5 0.5 TA2 A:TBR501 2.9 0.7 0.5 TA5 A:TBR501 2.9 0.7 0.5 TA3 A:TBR501 2.9 0.9 0.5 TA6 A:TBR501 2.9 0.4 0.5 O A:PRO151 3.8 94.1 1.0 BRC A:TBR501 4.1 0.1 0.5 TA1 A:TBR501 4.1 0.3 0.5 BR5 A:TBR501 4.1 91.3 0.5 BRB A:TBR501 4.1 0.4 0.5 BR6 A:TBR501 4.2 0.3 0.5 C A:PRO151 5.0 80.7 1.0

Tantalum binding site 5 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:0.7 occ:0.45 TA5 A:TBR501 0.0 0.7 0.5 BR6 A:TBR501 2.6 0.3 0.5 BRB A:TBR501 2.6 0.4 0.5 BR3 A:TBR501 2.6 0.6 0.5 BR7 A:TBR501 2.6 0.5 0.5 TA1 A:TBR501 2.9 0.3 0.5 TA4 A:TBR501 2.9 86.5 0.5 TA6 A:TBR501 2.9 0.4 0.5 TA3 A:TBR501 2.9 0.9 0.5 TA2 A:TBR501 4.1 0.7 0.5 BR8 A:TBR501 4.1 0.3 0.5 BR2 A:TBR501 4.1 0.4 0.5 BR4 A:TBR501 4.1 0.5 0.5 BRA A:TBR501 4.2 0.5 0.5

Tantalum binding site 6 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta501 b:0.4 occ:0.45 TA6 A:TBR501 0.0 0.4 0.5 BR4 A:TBR501 2.6 0.5 0.5 BRC A:TBR501 2.6 0.1 0.5 BRB A:TBR501 2.6 0.4 0.5 BR8 A:TBR501 2.6 0.3 0.5 TA5 A:TBR501 2.9 0.7 0.5 TA1 A:TBR501 2.9 0.3 0.5 TA4 A:TBR501 2.9 86.5 0.5 TA2 A:TBR501 2.9 0.7 0.5 BR3 A:TBR501 4.2 0.6 0.5 TA3 A:TBR501 4.2 0.9 0.5 BR9 A:TBR501 4.2 0.4 0.5 BR7 A:TBR501 4.2 0.5 0.5 BR1 A:TBR501 4.2 0.4 0.5 O F:ASP41 4.5 0.2 1.0

Tantalum binding site 7 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta502 b:0.6 occ:0.35 TA1 A:TBR502 0.0 0.6 0.4 BR3 A:TBR502 2.6 0.4 0.4 BR2 A:TBR502 2.6 0.2 0.4 BR1 A:TBR502 2.6 0.1 0.4 BR4 A:TBR502 2.6 86.5 0.3 TA5 A:TBR502 2.9 1.0 0.4 TA2 A:TBR502 2.9 0.1 0.4 TA6 A:TBR502 2.9 0.1 0.4 TA3 A:TBR502 2.9 0.7 0.4 TA4 A:TBR502 4.1 0.7 0.4 BR6 A:TBR502 4.1 0.7 0.4 BRC A:TBR502 4.2 0.7 0.4 BR5 A:TBR502 4.2 0.9 0.4 BRB A:TBR502 4.2 0.9 0.4

Tantalum binding site 8 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta502 b:0.1 occ:0.35 TA2 A:TBR502 0.0 0.1 0.4 BRC A:TBR502 2.6 0.7 0.4 BR5 A:TBR502 2.6 0.9 0.4 BR9 A:TBR502 2.6 90.5 0.3 BR1 A:TBR502 2.6 0.1 0.4 TA4 A:TBR502 2.9 0.7 0.4 TA1 A:TBR502 2.9 0.6 0.4 TA3 A:TBR502 2.9 0.7 0.4 TA6 A:TBR502 2.9 0.1 0.4 TA5 A:TBR502 4.1 1.0 0.4 BR2 A:TBR502 4.1 0.2 0.4 BRA A:TBR502 4.1 1.0 0.4 BR4 A:TBR502 4.2 86.5 0.3 BR8 A:TBR502 4.2 0.6 0.4

Tantalum binding site 9 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta502 b:0.7 occ:0.35 TA3 A:TBR502 0.0 0.7 0.4 BRA A:TBR502 2.6 1.0 0.4 BR6 A:TBR502 2.6 0.7 0.4 BR5 A:TBR502 2.6 0.9 0.4 BR2 A:TBR502 2.6 0.2 0.4 TA2 A:TBR502 2.9 0.1 0.4 TA4 A:TBR502 2.9 0.7 0.4 TA1 A:TBR502 2.9 0.6 0.4 TA5 A:TBR502 2.9 1.0 0.4 CD1 A:LEU150 4.1 80.9 1.0 BR1 A:TBR502 4.1 0.1 0.4 TA6 A:TBR502 4.2 0.1 0.4 BR3 A:TBR502 4.2 0.4 0.4 BR9 A:TBR502 4.2 90.5 0.3 BR7 A:TBR502 4.2 0.5 0.4

Tantalum binding site 10 out of 108 in the Crystal Structure of the Trkh/Trka Potassium Transport Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of the Trkh/Trka Potassium Transport Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Ta502 b:0.7 occ:0.35 TA4 A:TBR502 0.0 0.7 0.4 BR9 A:TBR502 2.6 90.5 0.3 BR8 A:TBR502 2.6 0.6 0.4 BR7 A:TBR502 2.6 0.5 0.4 BRA A:TBR502 2.6 1.0 0.4 TA2 A:TBR502 2.9 0.1 0.4 TA5 A:TBR502 2.9 1.0 0.4 TA3 A:TBR502 2.9 0.7 0.4 TA6 A:TBR502 2.9 0.1 0.4 BRC A:TBR502 4.1 0.7 0.4 TA1 A:TBR502 4.1 0.6 0.4 BR6 A:TBR502 4.1 0.7 0.4 BRB A:TBR502 4.1 0.9 0.4 BR5 A:TBR502 4.2 0.9 0.4

Y.Cao, Y.Pan, H.Huang, X.Jin, E.J.Levin, B.Kloss, M.Zhou. Gating of the Trkh Ion Channel By Its Associated Rck Protein Trka. Nature V. 496 317 2013.
ISSN: ISSN 0028-0836
PubMed: 23598339
DOI: 10.1038/NATURE12056