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Tantalum in PDB 4cv5: Yeast NOT1 CN9BD-CAF40 Complex

Protein crystallography data

The structure of Yeast NOT1 CN9BD-CAF40 Complex, PDB code: 4cv5 was solved by J.Basquin, E.Conti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.292 / 3.807
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 188.339, 188.339, 126.689, 90.00, 90.00, 90.00
R / Rfree (%) 27.64 / 29.52

Other elements in 4cv5:

The structure of Yeast NOT1 CN9BD-CAF40 Complex also contains other interesting chemical elements:

Bromine (Br) 36 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Tantalum atom in the Yeast NOT1 CN9BD-CAF40 Complex (pdb code 4cv5). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 18 binding sites of Tantalum where determined in the Yeast NOT1 CN9BD-CAF40 Complex, PDB code: 4cv5:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 18 in 4cv5

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Tantalum binding site 1 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.1
occ:0.29
TA1 A:TBR2272 0.0 0.1 0.3
BR3 A:TBR2272 2.6 0.9 0.3
BR2 A:TBR2272 2.6 0.5 0.3
BR1 A:TBR2272 2.6 0.1 0.3
BR4 A:TBR2272 2.6 0.7 0.3
TA5 A:TBR2272 2.9 0.1 0.3
TA2 A:TBR2272 2.9 0.5 0.3
TA6 A:TBR2272 2.9 0.9 0.3
TA3 A:TBR2272 2.9 0.5 0.3
TA4 A:TBR2272 4.1 0.1 0.3
BR6 A:TBR2272 4.1 0.7 0.3
BRC A:TBR2272 4.2 0.6 0.3
BRB A:TBR2272 4.2 0.9 0.3
BR5 A:TBR2272 4.2 0.4 0.3

Tantalum binding site 2 out of 18 in 4cv5

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Tantalum binding site 2 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.5
occ:0.29
TA2 A:TBR2272 0.0 0.5 0.3
BRC A:TBR2272 2.6 0.6 0.3
BR5 A:TBR2272 2.6 0.4 0.3
BR9 A:TBR2272 2.6 0.6 0.3
BR1 A:TBR2272 2.6 0.1 0.3
TA4 A:TBR2272 2.9 0.1 0.3
TA1 A:TBR2272 2.9 0.1 0.3
TA3 A:TBR2272 2.9 0.5 0.3
TA6 A:TBR2272 2.9 0.9 0.3
TA5 A:TBR2272 4.1 0.1 0.3
BRA A:TBR2272 4.2 0.6 0.3
BR2 A:TBR2272 4.2 0.5 0.3
BR4 A:TBR2272 4.2 0.7 0.3
BR8 A:TBR2272 4.2 0.0 0.3

Tantalum binding site 3 out of 18 in 4cv5

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Tantalum binding site 3 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.5
occ:0.29
TA3 A:TBR2272 0.0 0.5 0.3
BRA A:TBR2272 2.6 0.6 0.3
BR6 A:TBR2272 2.6 0.7 0.3
BR5 A:TBR2272 2.6 0.4 0.3
BR2 A:TBR2272 2.6 0.5 0.3
TA2 A:TBR2272 2.9 0.5 0.3
TA4 A:TBR2272 2.9 0.1 0.3
TA1 A:TBR2272 2.9 0.1 0.3
TA5 A:TBR2272 2.9 0.1 0.3
BR1 A:TBR2272 4.2 0.1 0.3
BR3 A:TBR2272 4.2 0.9 0.3
BR9 A:TBR2272 4.2 0.6 0.3
TA6 A:TBR2272 4.2 0.9 0.3
BR7 A:TBR2272 4.2 0.9 0.3

Tantalum binding site 4 out of 18 in 4cv5

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Tantalum binding site 4 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.1
occ:0.29
TA4 A:TBR2272 0.0 0.1 0.3
BR9 A:TBR2272 2.6 0.6 0.3
BR8 A:TBR2272 2.6 0.0 0.3
BR7 A:TBR2272 2.6 0.9 0.3
BRA A:TBR2272 2.6 0.6 0.3
TA2 A:TBR2272 2.9 0.5 0.3
TA5 A:TBR2272 2.9 0.1 0.3
TA3 A:TBR2272 2.9 0.5 0.3
TA6 A:TBR2272 2.9 0.9 0.3
TA1 A:TBR2272 4.1 0.1 0.3
BRC A:TBR2272 4.1 0.6 0.3
BR6 A:TBR2272 4.2 0.7 0.3
BR5 A:TBR2272 4.2 0.4 0.3
BRB A:TBR2272 4.2 0.9 0.3

Tantalum binding site 5 out of 18 in 4cv5

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Tantalum binding site 5 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.1
occ:0.29
TA5 A:TBR2272 0.0 0.1 0.3
BR6 A:TBR2272 2.6 0.7 0.3
BRB A:TBR2272 2.6 0.9 0.3
BR7 A:TBR2272 2.6 0.9 0.3
BR3 A:TBR2272 2.6 0.9 0.3
TA1 A:TBR2272 2.9 0.1 0.3
TA4 A:TBR2272 2.9 0.1 0.3
TA6 A:TBR2272 2.9 0.9 0.3
TA3 A:TBR2272 2.9 0.5 0.3
TA2 A:TBR2272 4.1 0.5 0.3
BR4 A:TBR2272 4.2 0.7 0.3
BR8 A:TBR2272 4.2 0.0 0.3
BRA A:TBR2272 4.2 0.6 0.3
BR2 A:TBR2272 4.2 0.5 0.3

Tantalum binding site 6 out of 18 in 4cv5

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Tantalum binding site 6 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2272

b:0.9
occ:0.29
TA6 A:TBR2272 0.0 0.9 0.3
BR4 A:TBR2272 2.6 0.7 0.3
BRC A:TBR2272 2.6 0.6 0.3
BRB A:TBR2272 2.6 0.9 0.3
BR8 A:TBR2272 2.6 0.0 0.3
TA5 A:TBR2272 2.9 0.1 0.3
TA1 A:TBR2272 2.9 0.1 0.3
TA4 A:TBR2272 2.9 0.1 0.3
TA2 A:TBR2272 2.9 0.5 0.3
BR7 A:TBR2272 4.2 0.9 0.3
BR3 A:TBR2272 4.2 0.9 0.3
BR9 A:TBR2272 4.2 0.6 0.3
TA3 A:TBR2272 4.2 0.5 0.3
BR1 A:TBR2272 4.2 0.1 0.3

Tantalum binding site 7 out of 18 in 4cv5

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Tantalum binding site 7 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2273

b:0.4
occ:0.34
TA1 A:TBR2273 0.0 0.4 0.3
BR3 A:TBR2273 2.6 0.3 0.3
BR2 A:TBR2273 2.6 0.9 0.3
BR1 A:TBR2273 2.6 0.5 0.3
BR4 A:TBR2273 2.6 0.1 0.3
TA5 A:TBR2273 2.9 0.5 0.3
TA2 A:TBR2273 2.9 0.8 0.3
TA6 A:TBR2273 2.9 0.3 0.3
TA3 A:TBR2273 2.9 0.9 0.3
TA4 A:TBR2273 4.1 0.4 0.3
BR6 A:TBR2273 4.1 0.1 0.3
BRC A:TBR2273 4.2 1.0 0.3
BRB A:TBR2273 4.2 0.3 0.3
BR5 A:TBR2273 4.2 0.8 0.3

Tantalum binding site 8 out of 18 in 4cv5

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Tantalum binding site 8 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2273

b:0.8
occ:0.34
TA2 A:TBR2273 0.0 0.8 0.3
BRC A:TBR2273 2.6 1.0 0.3
BR5 A:TBR2273 2.6 0.8 0.3
BR9 A:TBR2273 2.6 0.9 0.3
BR1 A:TBR2273 2.6 0.5 0.3
TA4 A:TBR2273 2.9 0.4 0.3
TA1 A:TBR2273 2.9 0.4 0.3
TA3 A:TBR2273 2.9 0.9 0.3
TA6 A:TBR2273 2.9 0.3 0.3
TA5 A:TBR2273 4.1 0.5 0.3
BR8 A:TBR2273 4.1 0.4 0.3
BRA A:TBR2273 4.1 1.0 0.3
BR2 A:TBR2273 4.2 0.9 0.3
BR4 A:TBR2273 4.2 0.1 0.3

Tantalum binding site 9 out of 18 in 4cv5

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Tantalum binding site 9 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2273

b:0.9
occ:0.34
TA3 A:TBR2273 0.0 0.9 0.3
BRA A:TBR2273 2.6 1.0 0.3
BR6 A:TBR2273 2.6 0.1 0.3
BR5 A:TBR2273 2.6 0.8 0.3
BR2 A:TBR2273 2.6 0.9 0.3
TA2 A:TBR2273 2.9 0.8 0.3
TA4 A:TBR2273 2.9 0.4 0.3
TA1 A:TBR2273 2.9 0.4 0.3
TA5 A:TBR2273 2.9 0.5 0.3
BR1 A:TBR2273 4.2 0.5 0.3
BR3 A:TBR2273 4.2 0.3 0.3
BR9 A:TBR2273 4.2 0.9 0.3
TA6 A:TBR2273 4.2 0.3 0.3
BR7 A:TBR2273 4.2 0.3 0.3

Tantalum binding site 10 out of 18 in 4cv5

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Tantalum binding site 10 out of 18 in the Yeast NOT1 CN9BD-CAF40 Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Yeast NOT1 CN9BD-CAF40 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta2273

b:0.4
occ:0.34
TA4 A:TBR2273 0.0 0.4 0.3
BR9 A:TBR2273 2.6 0.9 0.3
BR8 A:TBR2273 2.6 0.4 0.3
BR7 A:TBR2273 2.6 0.3 0.3
BRA A:TBR2273 2.6 1.0 0.3
TA2 A:TBR2273 2.9 0.8 0.3
TA5 A:TBR2273 2.9 0.5 0.3
TA3 A:TBR2273 2.9 0.9 0.3
TA6 A:TBR2273 2.9 0.3 0.3
OG1 A:THR1238 3.0 0.7 1.0
CB A:THR1238 3.7 0.4 1.0
TA1 A:TBR2273 4.1 0.4 0.3
BRC A:TBR2273 4.1 1.0 0.3
BR6 A:TBR2273 4.2 0.1 0.3
BR5 A:TBR2273 4.2 0.8 0.3
BRB A:TBR2273 4.2 0.3 0.3
O A:THR1238 4.2 0.9 1.0
CG2 A:THR1238 4.4 0.7 1.0
CA A:THR1238 5.0 0.2 1.0

Reference:

H.Mathys, J.Basquin, S.Ozgur, M.Czarnocki-Cieciura, F.Bonneau, A.Aartse, A.Dziembowski, M.Nowotny, E.Conti, W.Filipowicz. Structural and Biochemical Insights to the Role of the CCR4-Not Complex and DDX6 Atpase in Microrna Repression. Mol.Cell V. 54 751 2014.
ISSN: ISSN 1097-2765
PubMed: 24768538
DOI: 10.1016/J.MOLCEL.2014.03.036
Page generated: Wed Dec 16 02:26:15 2020

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