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Tantalum in PDB 4b09: Structure of Unphosphorylated Baer Dimer

Protein crystallography data

The structure of Structure of Unphosphorylated Baer Dimer, PDB code: 4b09 was solved by H.Choudhury, K.Beis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.549 / 3.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 236.602, 130.401, 198.213, 90.00, 90.40, 90.00
R / Rfree (%) 22.52 / 24.48

Other elements in 4b09:

The structure of Structure of Unphosphorylated Baer Dimer also contains other interesting chemical elements:

Bromine (Br) 108 atoms
Arsenic (As) 18 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 54;

Binding sites:

The binding sites of Tantalum atom in the Structure of Unphosphorylated Baer Dimer (pdb code 4b09). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 54 binding sites of Tantalum where determined in the Structure of Unphosphorylated Baer Dimer, PDB code: 4b09:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 54 in 4b09

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Tantalum binding site 1 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:0.8
occ:1.00
TA1 A:TBR1241 0.0 0.8 1.0
BR3 A:TBR1241 2.6 0.2 1.0
BR2 A:TBR1241 2.6 0.9 1.0
BR1 A:TBR1241 2.6 0.1 1.0
BR4 A:TBR1241 2.6 0.9 1.0
TA5 A:TBR1241 2.9 0.9 1.0
TA2 A:TBR1241 2.9 1.0 1.0
TA6 A:TBR1241 2.9 1.0 1.0
TA3 A:TBR1241 2.9 0.2 1.0
TA4 A:TBR1241 4.1 0.5 1.0
BR6 A:TBR1241 4.1 0.3 1.0
BRC A:TBR1241 4.2 0.2 1.0
BR5 A:TBR1241 4.2 0.9 1.0
BRB A:TBR1241 4.2 0.9 1.0

Tantalum binding site 2 out of 54 in 4b09

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Tantalum binding site 2 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:1.0
occ:1.00
TA2 A:TBR1241 0.0 1.0 1.0
BRC A:TBR1241 2.6 0.2 1.0
BR5 A:TBR1241 2.6 0.9 1.0
BR9 A:TBR1241 2.6 0.0 1.0
BR1 A:TBR1241 2.6 0.1 1.0
TA1 A:TBR1241 2.9 0.8 1.0
TA3 A:TBR1241 2.9 0.2 1.0
TA4 A:TBR1241 2.9 0.5 1.0
TA6 A:TBR1241 3.0 1.0 1.0
BRA A:TBR1241 3.7 0.3 1.0
TA5 A:TBR1241 4.1 0.9 1.0
BR2 A:TBR1241 4.2 0.9 1.0
BR4 A:TBR1241 4.2 0.9 1.0
BR8 A:TBR1241 4.2 0.2 1.0
OD2 A:ASP68 4.9 0.8 1.0

Tantalum binding site 3 out of 54 in 4b09

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Tantalum binding site 3 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:0.2
occ:1.00
TA3 A:TBR1241 0.0 0.2 1.0
BRA A:TBR1241 2.5 0.3 1.0
BR6 A:TBR1241 2.6 0.3 1.0
BR5 A:TBR1241 2.6 0.9 1.0
BR2 A:TBR1241 2.6 0.9 1.0
TA2 A:TBR1241 2.9 1.0 1.0
TA1 A:TBR1241 2.9 0.8 1.0
TA5 A:TBR1241 2.9 0.9 1.0
TA4 A:TBR1241 2.9 0.5 1.0
BR1 A:TBR1241 4.1 0.1 1.0
BR7 A:TBR1241 4.2 0.2 1.0
TA6 A:TBR1241 4.2 1.0 1.0
BR3 A:TBR1241 4.2 0.2 1.0
BR9 A:TBR1241 4.2 0.0 1.0

Tantalum binding site 4 out of 54 in 4b09

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Tantalum binding site 4 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:0.5
occ:1.00
TA4 A:TBR1241 0.0 0.5 1.0
BR9 A:TBR1241 2.6 0.0 1.0
BR8 A:TBR1241 2.6 0.2 1.0
BRA A:TBR1241 2.6 0.3 1.0
BR7 A:TBR1241 2.6 0.2 1.0
TA5 A:TBR1241 2.9 0.9 1.0
TA6 A:TBR1241 2.9 1.0 1.0
TA2 A:TBR1241 2.9 1.0 1.0
TA3 A:TBR1241 2.9 0.2 1.0
BRC A:TBR1241 4.1 0.2 1.0
TA1 A:TBR1241 4.1 0.8 1.0
BRB A:TBR1241 4.2 0.9 1.0
BR6 A:TBR1241 4.2 0.3 1.0
BR5 A:TBR1241 4.2 0.9 1.0
CB A:MET71 4.2 0.6 1.0
CE A:MET71 4.9 0.6 1.0
CG A:MET71 5.0 0.3 1.0

Tantalum binding site 5 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 5 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:0.9
occ:1.00
TA5 A:TBR1241 0.0 0.9 1.0
BR6 A:TBR1241 2.6 0.3 1.0
BRB A:TBR1241 2.6 0.9 1.0
BR3 A:TBR1241 2.6 0.2 1.0
BR7 A:TBR1241 2.6 0.2 1.0
TA4 A:TBR1241 2.9 0.5 1.0
TA1 A:TBR1241 2.9 0.8 1.0
TA6 A:TBR1241 2.9 1.0 1.0
TA3 A:TBR1241 2.9 0.2 1.0
TA2 A:TBR1241 4.1 1.0 1.0
BR8 A:TBR1241 4.2 0.2 1.0
BR4 A:TBR1241 4.2 0.9 1.0
BR2 A:TBR1241 4.2 0.9 1.0
BRA A:TBR1241 4.3 0.3 1.0
OE1 A:GLU75 4.5 0.1 1.0

Tantalum binding site 6 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 6 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1241

b:1.0
occ:1.00
TA6 A:TBR1241 0.0 1.0 1.0
BR4 A:TBR1241 2.6 0.9 1.0
BRC A:TBR1241 2.6 0.2 1.0
BRB A:TBR1241 2.6 0.9 1.0
BR8 A:TBR1241 2.6 0.2 1.0
TA4 A:TBR1241 2.9 0.5 1.0
TA1 A:TBR1241 2.9 0.8 1.0
TA5 A:TBR1241 2.9 0.9 1.0
TA2 A:TBR1241 3.0 1.0 1.0
BR9 A:TBR1241 4.1 0.0 1.0
BR3 A:TBR1241 4.2 0.2 1.0
TA3 A:TBR1241 4.2 0.2 1.0
BR1 A:TBR1241 4.2 0.1 1.0
BR7 A:TBR1241 4.2 0.2 1.0

Tantalum binding site 7 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 7 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1241

b:0.3
occ:0.50
TA1 B:TBR1241 0.0 0.3 0.5
BR3 B:TBR1241 2.6 0.4 0.5
BR2 B:TBR1241 2.6 0.1 0.5
BR4 B:TBR1241 2.6 0.7 0.5
BR1 B:TBR1241 2.6 0.8 0.5
TA5 B:TBR1241 2.9 0.1 0.5
TA2 B:TBR1241 2.9 0.1 0.5
TA3 B:TBR1241 2.9 0.3 0.5
TA6 B:TBR1241 2.9 1.0 0.5
BR6 B:TBR1241 4.1 0.1 0.5
TA4 B:TBR1241 4.1 0.6 0.5
BRC B:TBR1241 4.2 0.3 0.5
BRB B:TBR1241 4.2 0.1 0.5
BR5 B:TBR1241 4.2 0.4 0.5

Tantalum binding site 8 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 8 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1241

b:0.1
occ:0.50
TA2 B:TBR1241 0.0 0.1 0.5
BRC B:TBR1241 2.6 0.3 0.5
BR5 B:TBR1241 2.6 0.4 0.5
BR9 B:TBR1241 2.6 0.6 0.5
BR1 B:TBR1241 2.6 0.8 0.5
TA3 B:TBR1241 2.9 0.3 0.5
TA1 B:TBR1241 2.9 0.3 0.5
TA4 B:TBR1241 2.9 0.6 0.5
TA6 B:TBR1241 3.0 1.0 0.5
BRA B:TBR1241 3.7 0.4 0.5
TA5 B:TBR1241 4.1 0.1 0.5
BR2 B:TBR1241 4.2 0.1 0.5
BR4 B:TBR1241 4.2 0.7 0.5
BR8 B:TBR1241 4.2 0.8 0.5

Tantalum binding site 9 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 9 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1241

b:0.3
occ:0.50
TA3 B:TBR1241 0.0 0.3 0.5
BRA B:TBR1241 2.5 0.4 0.5
BR6 B:TBR1241 2.6 0.1 0.5
BR5 B:TBR1241 2.6 0.4 0.5
BR2 B:TBR1241 2.6 0.1 0.5
TA2 B:TBR1241 2.9 0.1 0.5
TA1 B:TBR1241 2.9 0.3 0.5
TA5 B:TBR1241 2.9 0.1 0.5
TA4 B:TBR1241 3.0 0.6 0.5
BR7 B:TBR1241 4.1 0.5 0.5
BR1 B:TBR1241 4.1 0.8 0.5
TA6 B:TBR1241 4.2 1.0 0.5
BR3 B:TBR1241 4.2 0.4 0.5
BR9 B:TBR1241 4.2 0.6 0.5

Tantalum binding site 10 out of 54 in 4b09

Go back to Tantalum Binding Sites List in 4b09
Tantalum binding site 10 out of 54 in the Structure of Unphosphorylated Baer Dimer


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Structure of Unphosphorylated Baer Dimer within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1241

b:0.6
occ:0.50
TA4 B:TBR1241 0.0 0.6 0.5
BR9 B:TBR1241 2.6 0.6 0.5
BRA B:TBR1241 2.6 0.4 0.5
BR8 B:TBR1241 2.6 0.8 0.5
BR7 B:TBR1241 2.6 0.5 0.5
TA5 B:TBR1241 2.9 0.1 0.5
TA6 B:TBR1241 2.9 1.0 0.5
TA2 B:TBR1241 2.9 0.1 0.5
TA3 B:TBR1241 3.0 0.3 0.5
BRC B:TBR1241 4.1 0.3 0.5
TA1 B:TBR1241 4.1 0.3 0.5
BRB B:TBR1241 4.2 0.1 0.5
BR6 B:TBR1241 4.2 0.1 0.5
BR5 B:TBR1241 4.2 0.4 0.5
CB B:ASP68 4.5 0.1 1.0
CZ A:ARG96 4.7 0.1 1.0
NH1 A:ARG96 4.8 99.6 1.0
NH2 A:ARG96 4.8 0.2 1.0

Reference:

H.G.Choudhury, K.Beis. The Dimeric Form of the Unphosphorylated Response Regulator Baer. Protein Sci. V. 22 1287 2013.
ISSN: ISSN 0961-8368
PubMed: 23868292
DOI: 10.1002/PRO.2311
Page generated: Wed Dec 16 02:26:21 2020

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