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Tantalum in PDB 3rwr: Crystal Structure of the Human XRCC4-Xlf Complex

Protein crystallography data

The structure of Crystal Structure of the Human XRCC4-Xlf Complex, PDB code: 3rwr was solved by S.N.Andres, M.S.Junop, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.03 / 3.94
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 745.379, 149.585, 80.475, 90.00, 94.72, 90.00
R / Rfree (%) 27.1 / 32.6

Other elements in 3rwr:

The structure of Crystal Structure of the Human XRCC4-Xlf Complex also contains other interesting chemical elements:

Bromine (Br) 96 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 48;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of the Human XRCC4-Xlf Complex (pdb code 3rwr). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 48 binding sites of Tantalum where determined in the Crystal Structure of the Human XRCC4-Xlf Complex, PDB code: 3rwr:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 48 in 3rwr

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Tantalum binding site 1 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:0.9
occ:0.16
TA1 D:TBR231 0.0 0.9 0.2
BR3 D:TBR231 2.6 0.8 0.2
BR2 D:TBR231 2.6 0.4 0.2
BR1 D:TBR231 2.6 0.0 0.2
BR4 D:TBR231 2.6 0.6 0.2
TA5 D:TBR231 2.9 1.0 0.2
TA2 D:TBR231 2.9 0.3 0.2
TA6 D:TBR231 2.9 0.8 0.2
TA3 D:TBR231 2.9 0.4 0.2
TA4 D:TBR231 4.1 0.9 0.2
BR6 D:TBR231 4.1 0.6 0.2
BRC D:TBR231 4.2 0.5 0.2
BRB D:TBR231 4.2 0.8 0.2
BR5 D:TBR231 4.2 0.3 0.2

Tantalum binding site 2 out of 48 in 3rwr

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Tantalum binding site 2 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:0.3
occ:0.16
TA2 D:TBR231 0.0 0.3 0.2
BRC D:TBR231 2.6 0.5 0.2
BR5 D:TBR231 2.6 0.3 0.2
BR9 D:TBR231 2.6 0.4 0.2
BR1 D:TBR231 2.6 0.0 0.2
TA4 D:TBR231 2.9 0.9 0.2
TA1 D:TBR231 2.9 0.9 0.2
TA3 D:TBR231 2.9 0.4 0.2
TA6 D:TBR231 2.9 0.8 0.2
TA5 D:TBR231 4.1 1.0 0.2
BRA D:TBR231 4.2 0.5 0.2
BR2 D:TBR231 4.2 0.4 0.2
BR4 D:TBR231 4.2 0.6 0.2
BR8 D:TBR231 4.2 0.9 0.2

Tantalum binding site 3 out of 48 in 3rwr

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Tantalum binding site 3 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:0.4
occ:0.16
TA3 D:TBR231 0.0 0.4 0.2
BRA D:TBR231 2.6 0.5 0.2
BR6 D:TBR231 2.6 0.6 0.2
BR5 D:TBR231 2.6 0.3 0.2
BR2 D:TBR231 2.6 0.4 0.2
TA2 D:TBR231 2.9 0.3 0.2
TA4 D:TBR231 2.9 0.9 0.2
TA1 D:TBR231 2.9 0.9 0.2
TA5 D:TBR231 2.9 1.0 0.2
NE2 D:HIS122 4.1 0.1 1.0
BR1 D:TBR231 4.2 0.0 0.2
BR3 D:TBR231 4.2 0.8 0.2
BR9 D:TBR231 4.2 0.4 0.2
TA6 D:TBR231 4.2 0.8 0.2
BR7 D:TBR231 4.2 0.8 0.2
CD2 D:HIS122 4.6 0.4 1.0

Tantalum binding site 4 out of 48 in 3rwr

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Tantalum binding site 4 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:0.9
occ:0.16
TA4 D:TBR231 0.0 0.9 0.2
BR9 D:TBR231 2.6 0.4 0.2
BR8 D:TBR231 2.6 0.9 0.2
BR7 D:TBR231 2.6 0.8 0.2
BRA D:TBR231 2.6 0.5 0.2
TA2 D:TBR231 2.9 0.3 0.2
TA5 D:TBR231 2.9 1.0 0.2
TA3 D:TBR231 2.9 0.4 0.2
TA6 D:TBR231 2.9 0.8 0.2
TA1 D:TBR231 4.1 0.9 0.2
BRC D:TBR231 4.1 0.5 0.2
BR6 D:TBR231 4.2 0.6 0.2
BR5 D:TBR231 4.2 0.3 0.2
BRB D:TBR231 4.2 0.8 0.2

Tantalum binding site 5 out of 48 in 3rwr

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Tantalum binding site 5 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:1.0
occ:0.16
TA5 D:TBR231 0.0 1.0 0.2
BR6 D:TBR231 2.6 0.6 0.2
BRB D:TBR231 2.6 0.8 0.2
BR7 D:TBR231 2.6 0.8 0.2
BR3 D:TBR231 2.6 0.8 0.2
TA1 D:TBR231 2.9 0.9 0.2
TA4 D:TBR231 2.9 0.9 0.2
TA6 D:TBR231 2.9 0.8 0.2
TA3 D:TBR231 2.9 0.4 0.2
TA2 D:TBR231 4.1 0.3 0.2
BR4 D:TBR231 4.2 0.6 0.2
NE2 D:HIS122 4.2 0.1 1.0
BR8 D:TBR231 4.2 0.9 0.2
BRA D:TBR231 4.2 0.5 0.2
BR2 D:TBR231 4.2 0.4 0.2
CD2 D:HIS122 4.3 0.4 1.0

Tantalum binding site 6 out of 48 in 3rwr

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Tantalum binding site 6 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ta231

b:0.8
occ:0.16
TA6 D:TBR231 0.0 0.8 0.2
BR4 D:TBR231 2.6 0.6 0.2
BRC D:TBR231 2.6 0.5 0.2
BRB D:TBR231 2.6 0.8 0.2
BR8 D:TBR231 2.6 0.9 0.2
TA5 D:TBR231 2.9 1.0 0.2
TA1 D:TBR231 2.9 0.9 0.2
TA4 D:TBR231 2.9 0.9 0.2
TA2 D:TBR231 2.9 0.3 0.2
BR7 D:TBR231 4.2 0.8 0.2
BR3 D:TBR231 4.2 0.8 0.2
BR9 D:TBR231 4.2 0.4 0.2
TA3 D:TBR231 4.2 0.4 0.2
BR1 D:TBR231 4.2 0.0 0.2

Tantalum binding site 7 out of 48 in 3rwr

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Tantalum binding site 7 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ta231

b:0.9
occ:0.15
TA1 H:TBR231 0.0 0.9 0.2
BR3 H:TBR231 2.6 0.1 0.2
BR2 H:TBR231 2.6 0.7 0.2
BR4 H:TBR231 2.6 0.3 0.2
BR1 H:TBR231 2.6 0.2 0.2
TA5 H:TBR231 2.9 0.7 0.2
TA2 H:TBR231 2.9 0.4 0.2
TA6 H:TBR231 2.9 0.9 0.2
TA3 H:TBR231 2.9 0.9 0.2
TA4 H:TBR231 4.1 0.1 0.2
BR6 H:TBR231 4.1 0.0 0.2
BRC H:TBR231 4.2 0.8 0.2
BRB H:TBR231 4.2 0.1 0.2
BR5 H:TBR231 4.2 0.4 0.2

Tantalum binding site 8 out of 48 in 3rwr

Go back to Tantalum Binding Sites List in 3rwr
Tantalum binding site 8 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ta231

b:0.4
occ:0.15
TA2 H:TBR231 0.0 0.4 0.2
BRC H:TBR231 2.6 0.8 0.2
BR5 H:TBR231 2.6 0.4 0.2
BR9 H:TBR231 2.6 0.3 0.2
BR1 H:TBR231 2.6 0.2 0.2
TA4 H:TBR231 2.9 0.1 0.2
TA1 H:TBR231 2.9 0.9 0.2
TA3 H:TBR231 2.9 0.9 0.2
TA6 H:TBR231 2.9 0.9 0.2
TA5 H:TBR231 4.1 0.7 0.2
BRA H:TBR231 4.2 1.0 0.2
BR2 H:TBR231 4.2 0.7 0.2
BR4 H:TBR231 4.2 0.3 0.2
BR8 H:TBR231 4.2 1.0 0.2

Tantalum binding site 9 out of 48 in 3rwr

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Tantalum binding site 9 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ta231

b:0.9
occ:0.15
TA3 H:TBR231 0.0 0.9 0.2
BRA H:TBR231 2.6 1.0 0.2
BR6 H:TBR231 2.6 0.0 0.2
BR5 H:TBR231 2.6 0.4 0.2
BR2 H:TBR231 2.6 0.7 0.2
TA2 H:TBR231 2.9 0.4 0.2
TA4 H:TBR231 2.9 0.1 0.2
TA1 H:TBR231 2.9 0.9 0.2
TA5 H:TBR231 2.9 0.7 0.2
BR1 H:TBR231 4.2 0.2 0.2
BR3 H:TBR231 4.2 0.1 0.2
BR9 H:TBR231 4.2 0.3 0.2
TA6 H:TBR231 4.2 0.9 0.2
BR7 H:TBR231 4.2 0.4 0.2

Tantalum binding site 10 out of 48 in 3rwr

Go back to Tantalum Binding Sites List in 3rwr
Tantalum binding site 10 out of 48 in the Crystal Structure of the Human XRCC4-Xlf Complex


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of the Human XRCC4-Xlf Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Ta231

b:0.1
occ:0.15
TA4 H:TBR231 0.0 0.1 0.2
BR9 H:TBR231 2.6 0.3 0.2
BR8 H:TBR231 2.6 1.0 0.2
BR7 H:TBR231 2.6 0.4 0.2
BRA H:TBR231 2.6 1.0 0.2
TA2 H:TBR231 2.9 0.4 0.2
TA5 H:TBR231 2.9 0.7 0.2
TA3 H:TBR231 2.9 0.9 0.2
TA6 H:TBR231 2.9 0.9 0.2
TA1 H:TBR231 4.1 0.9 0.2
BRC H:TBR231 4.1 0.8 0.2
BR6 H:TBR231 4.2 0.0 0.2
BR5 H:TBR231 4.2 0.4 0.2
BRB H:TBR231 4.2 0.1 0.2

Reference:

N.S.Andres, C.Wyman, M.Modesti, M.S.Junop. Structure of Human Xlf-XRCC4: Assembly of A Functional Dna Repair Complex To Be Published.
Page generated: Wed Dec 16 02:26:12 2020

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