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Tantalum in PDB 3ott: Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron

Protein crystallography data

The structure of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron, PDB code: 3ott was solved by Z.Zhang, Q.Liu, W.A.Hendrickson, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.27 / 2.30
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 88.173, 88.173, 432.956, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 25.3

Other elements in 3ott:

The structure of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron also contains other interesting chemical elements:

Bromine (Br) 24 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron (pdb code 3ott). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 12 binding sites of Tantalum where determined in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron, PDB code: 3ott:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 12 in 3ott

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Tantalum binding site 1 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:44.6
occ:0.50
TA1 A:TBR1 0.0 44.6 0.5
BR3 A:TBR1 2.6 54.4 0.5
BR1 A:TBR1 2.6 51.5 0.5
BR4 A:TBR1 2.6 49.9 0.5
BR2 A:TBR1 2.6 52.6 0.5
TA2 A:TBR1 2.7 47.7 0.5
TA6 A:TBR1 2.8 48.3 0.5
TA3 A:TBR1 2.8 46.3 0.5
TA5 A:TBR1 2.8 49.0 0.5
TA4 A:TBR1 3.9 51.8 0.5
BRC A:TBR1 4.0 52.4 0.5
BR5 A:TBR1 4.0 51.6 0.5
BRB A:TBR1 4.1 56.8 0.5
BR6 A:TBR1 4.2 50.6 0.5

Tantalum binding site 2 out of 12 in 3ott

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Tantalum binding site 2 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:47.7
occ:0.50
TA2 A:TBR1 0.0 47.7 0.5
BR9 A:TBR1 2.6 54.3 0.5
BRC A:TBR1 2.6 52.4 0.5
BR1 A:TBR1 2.6 51.5 0.5
BR5 A:TBR1 2.6 51.6 0.5
TA1 A:TBR1 2.7 44.6 0.5
TA6 A:TBR1 2.8 48.3 0.5
TA4 A:TBR1 2.8 51.8 0.5
TA3 A:TBR1 2.9 46.3 0.5
TA5 A:TBR1 4.0 49.0 0.5
BR8 A:TBR1 4.1 52.4 0.5
BR4 A:TBR1 4.2 49.9 0.5
BRA A:TBR1 4.2 51.7 0.5
BR2 A:TBR1 4.2 52.6 0.5
O A:SER58 4.5 20.2 1.0

Tantalum binding site 3 out of 12 in 3ott

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Tantalum binding site 3 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:46.3
occ:0.50
TA3 A:TBR1 0.0 46.3 0.5
BR6 A:TBR1 2.6 50.6 0.5
BRA A:TBR1 2.6 51.7 0.5
BR5 A:TBR1 2.6 51.6 0.5
BR2 A:TBR1 2.7 52.6 0.5
TA5 A:TBR1 2.8 49.0 0.5
TA1 A:TBR1 2.8 44.6 0.5
TA4 A:TBR1 2.8 51.8 0.5
TA2 A:TBR1 2.9 47.7 0.5
BR3 A:TBR1 4.0 54.4 0.5
TA6 A:TBR1 4.0 48.3 0.5
BR7 A:TBR1 4.1 54.0 0.5
BR9 A:TBR1 4.1 54.3 0.5
BR1 A:TBR1 4.2 51.5 0.5

Tantalum binding site 4 out of 12 in 3ott

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Tantalum binding site 4 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:51.8
occ:0.50
TA4 A:TBR1 0.0 51.8 0.5
BR8 A:TBR1 2.6 52.4 0.5
BR7 A:TBR1 2.6 54.0 0.5
BR9 A:TBR1 2.6 54.3 0.5
BRA A:TBR1 2.6 51.7 0.5
TA5 A:TBR1 2.8 49.0 0.5
TA3 A:TBR1 2.8 46.3 0.5
TA2 A:TBR1 2.8 47.7 0.5
TA6 A:TBR1 2.8 48.3 0.5
TA1 A:TBR1 3.9 44.6 0.5
BRB A:TBR1 4.1 56.8 0.5
BR5 A:TBR1 4.1 51.6 0.5
BR6 A:TBR1 4.2 50.6 0.5
BRC A:TBR1 4.2 52.4 0.5

Tantalum binding site 5 out of 12 in 3ott

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Tantalum binding site 5 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:49.0
occ:0.50
TA5 A:TBR1 0.0 49.0 0.5
BR3 A:TBR1 2.6 54.4 0.5
BR7 A:TBR1 2.6 54.0 0.5
BRB A:TBR1 2.6 56.8 0.5
BR6 A:TBR1 2.6 50.6 0.5
TA3 A:TBR1 2.8 46.3 0.5
TA4 A:TBR1 2.8 51.8 0.5
TA1 A:TBR1 2.8 44.6 0.5
TA6 A:TBR1 2.9 48.3 0.5
TA2 A:TBR1 4.0 47.7 0.5
BR2 A:TBR1 4.0 52.6 0.5
BR4 A:TBR1 4.1 49.9 0.5
BRA A:TBR1 4.1 51.7 0.5
BR8 A:TBR1 4.1 52.4 0.5

Tantalum binding site 6 out of 12 in 3ott

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Tantalum binding site 6 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta1

b:48.3
occ:0.50
TA6 A:TBR1 0.0 48.3 0.5
BR4 A:TBR1 2.6 49.9 0.5
BRB A:TBR1 2.6 56.8 0.5
BRC A:TBR1 2.6 52.4 0.5
BR8 A:TBR1 2.6 52.4 0.5
TA1 A:TBR1 2.8 44.6 0.5
TA2 A:TBR1 2.8 47.7 0.5
TA4 A:TBR1 2.8 51.8 0.5
TA5 A:TBR1 2.9 49.0 0.5
TA3 A:TBR1 4.0 46.3 0.5
BR3 A:TBR1 4.1 54.4 0.5
BR9 A:TBR1 4.1 54.3 0.5
BR1 A:TBR1 4.2 51.5 0.5
BR7 A:TBR1 4.2 54.0 0.5
CG A:GLU316 5.0 31.0 1.0

Tantalum binding site 7 out of 12 in 3ott

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Tantalum binding site 7 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta2

b:34.7
occ:0.90
TA1 B:TBR2 0.0 34.7 0.9
BR3 B:TBR2 2.6 44.5 0.9
BR4 B:TBR2 2.6 42.4 0.9
BR1 B:TBR2 2.6 38.3 0.9
BR2 B:TBR2 2.6 41.8 0.9
TA6 B:TBR2 2.7 33.9 0.9
TA2 B:TBR2 2.7 31.1 0.9
TA5 B:TBR2 2.8 30.3 0.9
TA3 B:TBR2 2.8 32.2 0.9
TA4 B:TBR2 3.9 32.4 0.9
BRC B:TBR2 4.0 43.1 0.9
BRB B:TBR2 4.1 43.4 0.9
BR5 B:TBR2 4.1 41.0 0.9
BR6 B:TBR2 4.2 42.6 0.9

Tantalum binding site 8 out of 12 in 3ott

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Tantalum binding site 8 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta2

b:31.1
occ:0.90
TA2 B:TBR2 0.0 31.1 0.9
BRC B:TBR2 2.6 43.1 0.9
BR5 B:TBR2 2.6 41.0 0.9
BR9 B:TBR2 2.6 43.2 0.9
BR1 B:TBR2 2.7 38.3 0.9
TA6 B:TBR2 2.7 33.9 0.9
TA1 B:TBR2 2.7 34.7 0.9
TA4 B:TBR2 2.8 32.4 0.9
TA3 B:TBR2 2.9 32.2 0.9
TA5 B:TBR2 3.9 30.3 0.9
BR8 B:TBR2 4.1 45.5 0.9
BR4 B:TBR2 4.2 42.4 0.9
BRA B:TBR2 4.2 38.1 0.9
BR2 B:TBR2 4.2 41.8 0.9

Tantalum binding site 9 out of 12 in 3ott

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Tantalum binding site 9 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta2

b:32.2
occ:0.90
TA3 B:TBR2 0.0 32.2 0.9
BR6 B:TBR2 2.6 42.6 0.9
BR5 B:TBR2 2.6 41.0 0.9
BRA B:TBR2 2.6 38.1 0.9
BR2 B:TBR2 2.7 41.8 0.9
TA5 B:TBR2 2.8 30.3 0.9
TA1 B:TBR2 2.8 34.7 0.9
TA4 B:TBR2 2.8 32.4 0.9
TA2 B:TBR2 2.9 31.1 0.9
TA6 B:TBR2 4.0 33.9 0.9
BR3 B:TBR2 4.1 44.5 0.9
BR1 B:TBR2 4.1 38.3 0.9
BR7 B:TBR2 4.1 43.1 0.9
BR9 B:TBR2 4.1 43.2 0.9

Tantalum binding site 10 out of 12 in 3ott

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Tantalum binding site 10 out of 12 in the Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of the Extracellular Domain of the Putative One Component System BT4673 From B. Thetaiotaomicron within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta2

b:32.4
occ:0.90
TA4 B:TBR2 0.0 32.4 0.9
BR8 B:TBR2 2.6 45.5 0.9
BR9 B:TBR2 2.6 43.2 0.9
BR7 B:TBR2 2.6 43.1 0.9
BRA B:TBR2 2.6 38.1 0.9
TA2 B:TBR2 2.8 31.1 0.9
TA5 B:TBR2 2.8 30.3 0.9
TA6 B:TBR2 2.8 33.9 0.9
TA3 B:TBR2 2.8 32.2 0.9
TA1 B:TBR2 3.9 34.7 0.9
BR5 B:TBR2 4.1 41.0 0.9
BRB B:TBR2 4.1 43.4 0.9
BR6 B:TBR2 4.1 42.6 0.9
BRC B:TBR2 4.2 43.1 0.9

Reference:

Z.Zhang, Q.Liu, W.A.Hendrickson. Crystal Structures of Apparent Saccharide Sensors From Histidine Kinase Receptors Prevalent in A Human Gut Symbiont. Febs J. V. 281 4263 2014.
ISSN: ISSN 1742-464X
PubMed: 24995510
DOI: 10.1111/FEBS.12904
Page generated: Wed Dec 16 02:26:11 2020

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