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Tantalum in PDB 3en9: Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein

Enzymatic activity of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein

All present enzymatic activity of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein:
3.4.24.57;

Protein crystallography data

The structure of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein, PDB code: 3en9 was solved by D.Neculai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 65.29 / 2.67
Space group P 41 2 2
Cell size a, b, c (Å), α, β, γ (°) 148.730, 148.730, 136.420, 90.00, 90.00, 90.00
R / Rfree (%) 20.2 / 26.4

Other elements in 3en9:

The structure of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein also contains other interesting chemical elements:

Bromine (Br) 19 atoms
Magnesium (Mg) 2 atoms

Tantalum Binding Sites:

The binding sites of Tantalum atom in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein (pdb code 3en9). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 9 binding sites of Tantalum where determined in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein, PDB code: 3en9:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Tantalum binding site 1 out of 9 in 3en9

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Tantalum binding site 1 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:67.2
occ:0.70
 TA1 B:TBR601 0.0 67.2 0.7
OE1 B:GLU23 2.3 76.9 1.0
BR1 B:TBR601 2.6 61.8 0.7
BR3 B:TBR601 2.6 70.3 0.7
BR4 B:TBR601 2.6 69.5 0.7
BR2 B:TBR601 2.6 75.8 0.7
TA6 B:TBR601 2.6 65.9 0.7
TA3 B:TBR601 2.7 65.5 0.7
TA5 B:TBR601 2.7 60.6 0.7
TA2 B:TBR601 2.7 59.7 0.7
CD B:GLU23 3.5 72.9 1.0
TA4 B:TBR601 3.8 62.4 0.7
BRB B:TBR601 4.0 59.1 0.7
BR5 B:TBR601 4.1 64.7 0.7
BRC B:TBR601 4.1 67.7 0.7
BR6 B:TBR601 4.1 57.3 0.7
CG B:GLU23 4.4 68.8 1.0
OE2 B:GLU23 4.4 71.1 1.0
CB B:GLU23 4.6 67.3 1.0

Tantalum binding site 2 out of 9 in 3en9

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Tantalum binding site 2 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:59.7
occ:0.70
 TA2 B:TBR601 0.0 59.7 0.7
BR5 B:TBR601 2.6 64.7 0.7
BR6 B:TBR601 2.6 57.3 0.7
TA3 B:TBR601 2.6 65.5 0.7
BR1 B:TBR601 2.7 61.8 0.7
BRA B:TBR601 2.7 68.9 0.7
TA4 B:TBR601 2.7 62.4 0.7
TA1 B:TBR601 2.7 67.2 0.7
TA5 B:TBR601 2.7 60.6 0.7
TA6 B:TBR601 3.8 65.9 0.7
BR2 B:TBR601 4.0 75.8 0.7
BR3 B:TBR601 4.1 70.3 0.7
BR9 B:TBR601 4.1 67.9 0.7
BR7 B:TBR601 4.1 60.4 0.7
OE1 B:GLU23 4.5 76.9 1.0

Tantalum binding site 3 out of 9 in 3en9

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Tantalum binding site 3 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:65.5
occ:0.70
 TA3 B:TBR601 0.0 65.5 0.7
BR5 B:TBR601 2.6 64.7 0.7
TA2 B:TBR601 2.6 59.7 0.7
BRC B:TBR601 2.6 67.7 0.7
TA4 B:TBR601 2.7 62.4 0.7
TA6 B:TBR601 2.7 65.9 0.7
BR2 B:TBR601 2.7 75.8 0.7
TA1 B:TBR601 2.7 67.2 0.7
BR9 B:TBR601 2.7 67.9 0.7
TA5 B:TBR601 3.8 60.6 0.7
BR1 B:TBR601 4.0 61.8 0.7
BR4 B:TBR601 4.1 69.5 0.7
BR8 B:TBR601 4.1 72.0 0.7
BRA B:TBR601 4.1 68.9 0.7
OE1 B:GLU23 4.4 76.9 1.0

Tantalum binding site 4 out of 9 in 3en9

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Tantalum binding site 4 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:62.4
occ:0.70
 TA4 B:TBR601 0.0 62.4 0.7
BR8 B:TBR601 2.6 72.0 0.7
BR7 B:TBR601 2.6 60.4 0.7
BRA B:TBR601 2.6 68.9 0.7
BR9 B:TBR601 2.6 67.9 0.7
TA3 B:TBR601 2.7 65.5 0.7
TA2 B:TBR601 2.7 59.7 0.7
TA6 B:TBR601 2.7 65.9 0.7
TA5 B:TBR601 2.7 60.6 0.7
TA1 B:TBR601 3.8 67.2 0.7
BRC B:TBR601 4.0 67.7 0.7
BR6 B:TBR601 4.0 57.3 0.7
BRB B:TBR601 4.1 59.1 0.7
BR5 B:TBR601 4.1 64.7 0.7

Tantalum binding site 5 out of 9 in 3en9

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Tantalum binding site 5 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:60.6
occ:0.70
 TA5 B:TBR601 0.0 60.6 0.7
BRB B:TBR601 2.6 59.1 0.7
BR6 B:TBR601 2.6 57.3 0.7
BR3 B:TBR601 2.6 70.3 0.7
BR7 B:TBR601 2.7 60.4 0.7
TA1 B:TBR601 2.7 67.2 0.7
TA4 B:TBR601 2.7 62.4 0.7
TA6 B:TBR601 2.7 65.9 0.7
TA2 B:TBR601 2.7 59.7 0.7
TA3 B:TBR601 3.8 65.5 0.7
BR8 B:TBR601 4.1 72.0 0.7
BR1 B:TBR601 4.1 61.8 0.7
BRA B:TBR601 4.1 68.9 0.7
BR4 B:TBR601 4.1 69.5 0.7
OD2 B:ASP21 4.4 74.9 1.0
OE1 B:GLU23 4.7 76.9 1.0
CG B:PRO0 5.0 80.2 1.0

Tantalum binding site 6 out of 9 in 3en9

Go back to Tantalum Binding Sites List in 3en9
Tantalum binding site 6 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta601

b:65.9
occ:0.70
 TA6 B:TBR601 0.0 65.9 0.7
BRB B:TBR601 2.6 59.1 0.7
BRC B:TBR601 2.6 67.7 0.7
BR8 B:TBR601 2.6 72.0 0.7
TA1 B:TBR601 2.6 67.2 0.7
TA3 B:TBR601 2.7 65.5 0.7
BR4 B:TBR601 2.7 69.5 0.7
TA4 B:TBR601 2.7 62.4 0.7
TA5 B:TBR601 2.7 60.6 0.7
TA2 B:TBR601 3.8 59.7 0.7
BR9 B:TBR601 4.1 67.9 0.7
BR2 B:TBR601 4.1 75.8 0.7
BR7 B:TBR601 4.1 60.4 0.7
BR3 B:TBR601 4.1 70.3 0.7
OE1 B:GLU23 4.6 76.9 1.0

Tantalum binding site 7 out of 9 in 3en9

Go back to Tantalum Binding Sites List in 3en9
Tantalum binding site 7 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta601

b:0.3
occ:0.30
 TA1 A:TBR601 0.0 0.3 0.3
BR2 A:TBR601 2.6 0.8 0.3
BR4 A:TBR601 2.6 0.4 0.3
BR1 A:TBR601 2.6 0.3 0.2
BR3 A:TBR601 2.6 0.1 0.3
TA3 A:TBR601 2.9 0.3 0.3
TA6 A:TBR601 2.9 0.5 0.3
BRC A:TBR601 4.2 0.3 0.3
BRB A:TBR601 4.3 91.2 0.3
OE1 A:GLU518 4.7 0.6 1.0
CD A:GLU518 5.0 0.4 1.0

Tantalum binding site 8 out of 9 in 3en9

Go back to Tantalum Binding Sites List in 3en9
Tantalum binding site 8 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta601

b:0.3
occ:0.30
 TA3 A:TBR601 0.0 0.3 0.3
BR2 A:TBR601 2.6 0.8 0.3
BRC A:TBR601 2.6 0.3 0.3
TA6 A:TBR601 2.9 0.5 0.3
TA1 A:TBR601 2.9 0.3 0.3
BR1 A:TBR601 3.3 0.3 0.2
BR4 A:TBR601 4.2 0.4 0.3
BR8 A:TBR601 4.8 0.4 0.2

Tantalum binding site 9 out of 9 in 3en9

Go back to Tantalum Binding Sites List in 3en9
Tantalum binding site 9 out of 9 in the Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Structure of the Methanococcus Jannaschii KAE1-BUD32 Fusion Protein within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta601

b:0.5
occ:0.30
 TA6 A:TBR601 0.0 0.5 0.3
BR8 A:TBR601 2.6 0.4 0.2
BRB A:TBR601 2.6 91.2 0.3
BRC A:TBR601 2.6 0.3 0.3
BR4 A:TBR601 2.6 0.4 0.3
TA3 A:TBR601 2.9 0.3 0.3
TA1 A:TBR601 2.9 0.3 0.3
BR3 A:TBR601 4.2 0.1 0.3
BR2 A:TBR601 4.3 0.8 0.3
BR1 A:TBR601 5.0 0.3 0.2

Reference:

D.Y.Mao, D.Neculai, M.Downey, S.Orlicky, Y.Z.Haffani, D.F.Ceccarelli, J.S.Ho, R.K.Szilard, W.Zhang, C.S.Ho, L.Wan, C.Fares, S.Rumpel, I.Kurinov, C.H.Arrowsmith, D.Durocher, F.Sicheri. Atomic Structure of the Keops Complex: An Ancient Protein Kinase-Containing Molecular Machine. Mol.Cell V. 32 259 2008.
ISSN: ISSN 1097-2765
PubMed: 18951093
DOI: 10.1016/J.MOLCEL.2008.10.002
Page generated: Fri Oct 11 07:51:32 2024

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