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Tantalum in PDB 3c0v: Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12

Protein crystallography data

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v was solved by O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.31 / 1.80
Space group P 64
Cell size a, b, c (Å), α, β, γ (°) 113.219, 113.219, 85.077, 90.00, 90.00, 120.00
R / Rfree (%) 15.8 / 20.7

Other elements in 3c0v:

The structure of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 also contains other interesting chemical elements:

Bromine (Br) 60 atoms
Sodium (Na) 2 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 (pdb code 3c0v). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 30 binding sites of Tantalum where determined in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12, PDB code: 3c0v:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 1 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:36.9
occ:0.35
TA1 A:TBR158 0.0 36.9 0.3
BR3 A:TBR158 2.6 28.6 0.3
BR4 A:TBR158 2.6 32.9 0.3
BR2 A:TBR158 2.6 32.3 0.3
BR1 A:TBR158 2.6 30.6 0.3
TA2 A:TBR158 2.9 34.1 0.3
TA5 A:TBR158 2.9 36.4 0.3
TA3 A:TBR158 2.9 34.9 0.3
TA6 A:TBR158 2.9 33.8 0.3
NE2 A:GLN42 3.0 29.9 1.0
OD2 A:ASP40 3.2 31.3 1.0
CG A:ASP40 3.4 26.2 1.0
OD1 A:ASP40 3.6 27.5 1.0
O A:HOH278 3.8 50.7 1.0
CD A:GLN42 3.8 30.5 1.0
BRC A:TBR158 4.1 31.4 0.3
TA4 A:TBR158 4.1 35.3 0.3
BR6 A:TBR158 4.1 32.6 0.3
BRB A:TBR158 4.2 32.4 0.3
CB A:ASP40 4.2 24.9 1.0
BR5 A:TBR158 4.2 31.7 0.3
OE1 A:GLN42 4.3 30.5 1.0
CG A:GLN42 4.7 26.2 1.0

Tantalum binding site 2 out of 30 in 3c0v

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Tantalum binding site 2 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:34.1
occ:0.35
TA2 A:TBR158 0.0 34.1 0.3
BR9 A:TBR158 2.6 30.2 0.3
BRC A:TBR158 2.6 31.4 0.3
BR5 A:TBR158 2.6 31.7 0.3
BR1 A:TBR158 2.6 30.6 0.3
TA1 A:TBR158 2.9 36.9 0.3
TA6 A:TBR158 2.9 33.8 0.3
TA3 A:TBR158 2.9 34.9 0.3
TA4 A:TBR158 2.9 35.3 0.3
NH1 B:ARG14 3.5 38.0 0.5
CZ B:ARG14 3.9 35.6 0.5
TA5 A:TBR158 4.1 36.4 0.3
BR2 A:TBR158 4.2 32.3 0.3
BR4 A:TBR158 4.2 32.9 0.3
BRA A:TBR158 4.2 33.0 0.3
BR8 A:TBR158 4.2 31.6 0.3
NH2 B:ARG14 4.4 37.3 0.5
OE1 A:GLN42 4.5 30.5 1.0
NE B:ARG14 4.5 34.1 0.5
NE2 A:GLN42 4.6 29.9 1.0
CD B:ARG14 4.8 32.8 0.5
CD A:GLN42 4.8 30.5 1.0

Tantalum binding site 3 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 3 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:34.9
occ:0.35
TA3 A:TBR158 0.0 34.9 0.3
BRA A:TBR158 2.6 33.0 0.3
BR6 A:TBR158 2.6 32.6 0.3
BR5 A:TBR158 2.6 31.7 0.3
BR2 A:TBR158 2.6 32.3 0.3
TA4 A:TBR158 2.9 35.3 0.3
TA2 A:TBR158 2.9 34.1 0.3
TA1 A:TBR158 2.9 36.9 0.3
TA5 A:TBR158 2.9 36.4 0.3
O A:HOH278 4.0 50.7 1.0
BR1 A:TBR158 4.1 30.6 0.3
TA6 A:TBR158 4.1 33.8 0.3
BR9 A:TBR158 4.1 30.2 0.3
BR7 A:TBR158 4.1 31.5 0.3
BR3 A:TBR158 4.2 28.6 0.3
BR1 A:TBR159 4.9 36.3 0.2

Tantalum binding site 4 out of 30 in 3c0v

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Tantalum binding site 4 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:35.3
occ:0.35
TA4 A:TBR158 0.0 35.3 0.3
BR8 A:TBR158 2.6 31.6 0.3
BR7 A:TBR158 2.6 31.5 0.3
BR9 A:TBR158 2.6 30.2 0.3
BRA A:TBR158 2.6 33.0 0.3
TA6 A:TBR158 2.9 33.8 0.3
TA5 A:TBR158 2.9 36.4 0.3
TA3 A:TBR158 2.9 34.9 0.3
TA2 A:TBR158 2.9 34.1 0.3
TA1 A:TBR158 4.1 36.9 0.3
BR5 A:TBR158 4.1 31.7 0.3
BRB A:TBR158 4.1 32.4 0.3
BR6 A:TBR158 4.2 32.6 0.3
BRC A:TBR158 4.2 31.4 0.3
O A:HOH277 4.9 42.9 1.0

Tantalum binding site 5 out of 30 in 3c0v

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Tantalum binding site 5 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:36.4
occ:0.35
TA5 A:TBR158 0.0 36.4 0.3
BR3 A:TBR158 2.6 28.6 0.3
BR7 A:TBR158 2.6 31.5 0.3
BRB A:TBR158 2.6 32.4 0.3
BR6 A:TBR158 2.6 32.6 0.3
TA4 A:TBR158 2.9 35.3 0.3
TA1 A:TBR158 2.9 36.9 0.3
TA3 A:TBR158 2.9 34.9 0.3
TA6 A:TBR158 2.9 33.8 0.3
BR4 A:TBR158 4.0 32.9 0.3
TA2 A:TBR158 4.1 34.1 0.3
BRA A:TBR158 4.1 33.0 0.3
BR8 A:TBR158 4.2 31.6 0.3
BR2 A:TBR158 4.2 32.3 0.3
O A:HOH278 4.3 50.7 1.0
OD2 A:ASP40 4.6 31.3 1.0

Tantalum binding site 6 out of 30 in 3c0v

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Tantalum binding site 6 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta158

b:33.8
occ:0.35
TA6 A:TBR158 0.0 33.8 0.3
O A:HOH277 2.5 42.9 1.0
BR4 A:TBR158 2.6 32.9 0.3
BRB A:TBR158 2.6 32.4 0.3
BRC A:TBR158 2.6 31.4 0.3
BR8 A:TBR158 2.6 31.6 0.3
TA4 A:TBR158 2.9 35.3 0.3
TA2 A:TBR158 2.9 34.1 0.3
TA1 A:TBR158 2.9 36.9 0.3
TA5 A:TBR158 2.9 36.4 0.3
O A:HOH255 4.0 36.2 1.0
BR9 A:TBR158 4.1 30.2 0.3
BR3 A:TBR158 4.1 28.6 0.3
OE1 A:GLN42 4.1 30.5 1.0
TA3 A:TBR158 4.1 34.9 0.3
BR7 A:TBR158 4.2 31.5 0.3
CD A:GLN42 4.2 30.5 1.0
BR1 A:TBR158 4.3 30.6 0.3
NE2 A:GLN42 4.4 29.9 1.0
CG A:GLN42 4.8 26.2 1.0

Tantalum binding site 7 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 7 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta159

b:38.3
occ:0.25
TA1 A:TBR159 0.0 38.3 0.2
BR2 A:TBR159 2.6 36.2 0.2
BR3 A:TBR159 2.6 37.4 0.2
BR4 A:TBR159 2.6 35.9 0.2
BR1 A:TBR159 2.6 36.3 0.2
TA2 A:TBR159 2.9 36.9 0.2
TA5 A:TBR159 2.9 37.9 0.2
TA3 A:TBR159 2.9 36.0 0.2
TA6 A:TBR159 2.9 37.9 0.2
BRC A:TBR159 4.1 36.2 0.2
BRB A:TBR159 4.1 36.6 0.2
TA4 A:TBR159 4.1 36.5 0.2
BR5 A:TBR159 4.2 34.9 0.2
BR6 A:TBR159 4.2 35.9 0.2
O B:SER151 4.5 38.7 1.0
O A:HOH250 4.6 36.0 1.0
O B:LEU150 4.8 31.4 1.0

Tantalum binding site 8 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 8 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta159

b:36.9
occ:0.25
TA2 A:TBR159 0.0 36.9 0.2
BRC A:TBR159 2.6 36.2 0.2
BR1 A:TBR159 2.6 36.3 0.2
BR5 A:TBR159 2.6 34.9 0.2
BR9 A:TBR159 2.6 35.6 0.2
TA1 A:TBR159 2.9 38.3 0.2
TA3 A:TBR159 2.9 36.0 0.2
TA4 A:TBR159 2.9 36.5 0.2
TA6 A:TBR159 2.9 37.9 0.2
NZ A:LYS39 3.9 40.5 1.0
BR4 A:TBR159 4.1 35.9 0.2
TA5 A:TBR159 4.1 37.9 0.2
BR8 A:TBR159 4.1 37.0 0.2
BR2 A:TBR159 4.2 36.2 0.2
BRA A:TBR159 4.2 36.1 0.2
O A:HOH278 4.3 50.7 1.0
BR2 A:TBR158 4.7 32.3 0.3

Tantalum binding site 9 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 9 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta159

b:36.0
occ:0.25
TA3 A:TBR159 0.0 36.0 0.2
BR5 A:TBR159 2.6 34.9 0.2
BR6 A:TBR159 2.6 35.9 0.2
BR2 A:TBR159 2.6 36.2 0.2
BRA A:TBR159 2.6 36.1 0.2
TA2 A:TBR159 2.9 36.9 0.2
TA5 A:TBR159 2.9 37.9 0.2
TA1 A:TBR159 2.9 38.3 0.2
TA4 A:TBR159 2.9 36.5 0.2
BR9 A:TBR159 4.1 35.6 0.2
BR1 A:TBR159 4.1 36.3 0.2
BR3 A:TBR159 4.1 37.4 0.2
TA6 A:TBR159 4.1 37.9 0.2
BR7 A:TBR159 4.2 36.4 0.2

Tantalum binding site 10 out of 30 in 3c0v

Go back to Tantalum Binding Sites List in 3c0v
Tantalum binding site 10 out of 30 in the Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of Cytokinin-Specific Binding Protein in Complex with Cytokinin and TA6BR12 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta159

b:36.5
occ:0.25
TA4 A:TBR159 0.0 36.5 0.2
BR8 A:TBR159 2.6 37.0 0.2
BR9 A:TBR159 2.6 35.6 0.2
BR7 A:TBR159 2.6 36.4 0.2
BRA A:TBR159 2.6 36.1 0.2
TA5 A:TBR159 2.9 37.9 0.2
TA2 A:TBR159 2.9 36.9 0.2
TA3 A:TBR159 2.9 36.0 0.2
TA6 A:TBR159 2.9 37.9 0.2
TA1 A:TBR159 4.1 38.3 0.2
BR6 A:TBR159 4.1 35.9 0.2
BR5 A:TBR159 4.1 34.9 0.2
BRC A:TBR159 4.2 36.2 0.2
BRB A:TBR159 4.2 36.6 0.2
NZ A:LYS39 4.4 40.5 1.0

Reference:

O.Pasternak, A.Bujacz, J.Biesiadka, G.Bujacz, M.Sikorski, M.Jaskolski. Mad Phasing Using the (Ta(6)Br(12))(2+) Cluster: A Retrospective Study Acta Crystallogr.,Sect.D V. 64 595 2008.
ISSN: ISSN 0907-4449
PubMed: 18453695
DOI: 10.1107/S0907444908007853
Page generated: Wed Dec 16 02:26:09 2020

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