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Tantalum in PDB 1z7l: Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme

Protein crystallography data

The structure of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme, PDB code: 1z7l was solved by R.H.Szczepanowski, R.Filipek, M.Bochtler, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.80
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 216.123, 216.123, 196.092, 90.00, 90.00, 120.00
R / Rfree (%) 27.7 / 30.8

Other elements in 1z7l:

The structure of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme also contains other interesting chemical elements:

Bromine (Br) 36 atoms

Tantalum Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Tantalum atom in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme (pdb code 1z7l). This binding sites where shown within 5.0 Angstroms radius around Tantalum atom.
In total 18 binding sites of Tantalum where determined in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme, PDB code: 1z7l:
Jump to Tantalum binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Tantalum binding site 1 out of 18 in 1z7l

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Tantalum binding site 1 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 1 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:88.3
occ:0.15
TA1 A:TBR999 0.0 88.3 0.1
BR3 A:TBR999 2.6 86.7 0.1
BR2 A:TBR999 2.6 86.8 0.1
BR4 A:TBR999 2.6 87.0 0.1
BR1 A:TBR999 2.6 87.0 0.1
TA5 A:TBR999 2.9 86.0 0.1
TA3 A:TBR999 2.9 86.6 0.1
TA2 A:TBR999 2.9 86.7 0.1
TA6 A:TBR999 3.0 86.0 0.1
TA4 A:TBR999 4.1 83.4 0.1
BR6 A:TBR999 4.1 87.0 0.1
BR5 A:TBR999 4.2 86.4 0.1
BRB A:TBR999 4.2 86.7 0.1
BRC A:TBR999 4.2 86.7 0.1

Tantalum binding site 2 out of 18 in 1z7l

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Tantalum binding site 2 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 2 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:86.7
occ:0.15
TA2 A:TBR999 0.0 86.7 0.1
BRC A:TBR999 2.6 86.7 0.1
BR9 A:TBR999 2.6 86.7 0.1
BR1 A:TBR999 2.6 87.0 0.1
BR5 A:TBR999 2.6 86.4 0.1
TA4 A:TBR999 2.9 83.4 0.1
TA6 A:TBR999 2.9 86.0 0.1
TA1 A:TBR999 2.9 88.3 0.1
TA3 A:TBR999 3.0 86.6 0.1
TA5 A:TBR999 4.1 86.0 0.1
BRA A:TBR999 4.2 86.1 0.1
BR4 A:TBR999 4.2 87.0 0.1
BR8 A:TBR999 4.2 86.2 0.1
BR2 A:TBR999 4.2 86.8 0.1

Tantalum binding site 3 out of 18 in 1z7l

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Tantalum binding site 3 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 3 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:86.6
occ:0.15
TA3 A:TBR999 0.0 86.6 0.1
BRA A:TBR999 2.6 86.1 0.1
BR6 A:TBR999 2.6 87.0 0.1
BR5 A:TBR999 2.6 86.4 0.1
BR2 A:TBR999 2.6 86.8 0.1
TA1 A:TBR999 2.9 88.3 0.1
TA4 A:TBR999 2.9 83.4 0.1
TA5 A:TBR999 2.9 86.0 0.1
TA2 A:TBR999 3.0 86.7 0.1
BR3 A:TBR999 4.2 86.7 0.1
TA6 A:TBR999 4.2 86.0 0.1
BR9 A:TBR999 4.2 86.7 0.1
BR1 A:TBR999 4.2 87.0 0.1
BR7 A:TBR999 4.2 86.0 0.1
CG A:GLU653 4.4 64.1 1.0

Tantalum binding site 4 out of 18 in 1z7l

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Tantalum binding site 4 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 4 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:83.4
occ:0.15
TA4 A:TBR999 0.0 83.4 0.1
BR7 A:TBR999 2.6 86.0 0.1
BR8 A:TBR999 2.6 86.2 0.1
BR9 A:TBR999 2.6 86.7 0.1
BRA A:TBR999 2.6 86.1 0.1
TA5 A:TBR999 2.9 86.0 0.1
TA6 A:TBR999 2.9 86.0 0.1
TA2 A:TBR999 2.9 86.7 0.1
TA3 A:TBR999 2.9 86.6 0.1
TA1 A:TBR999 4.1 88.3 0.1
BR6 A:TBR999 4.1 87.0 0.1
BRB A:TBR999 4.1 86.7 0.1
BRC A:TBR999 4.2 86.7 0.1
BR5 A:TBR999 4.2 86.4 0.1

Tantalum binding site 5 out of 18 in 1z7l

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Tantalum binding site 5 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 5 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:86.0
occ:0.15
TA5 A:TBR999 0.0 86.0 0.1
BR6 A:TBR999 2.6 87.0 0.1
BRB A:TBR999 2.6 86.7 0.1
BR7 A:TBR999 2.6 86.0 0.1
BR3 A:TBR999 2.6 86.7 0.1
TA4 A:TBR999 2.9 83.4 0.1
TA6 A:TBR999 2.9 86.0 0.1
TA1 A:TBR999 2.9 88.3 0.1
TA3 A:TBR999 2.9 86.6 0.1
OE1 A:GLN646 3.6 93.7 1.0
OD1 A:ASP650 3.7 88.1 1.0
NE2 A:GLN646 4.1 87.7 1.0
TA2 A:TBR999 4.1 86.7 0.1
BRA A:TBR999 4.1 86.1 0.1
BR4 A:TBR999 4.2 87.0 0.1
BR8 A:TBR999 4.2 86.2 0.1
BR2 A:TBR999 4.2 86.8 0.1
CD A:GLN646 4.3 83.9 1.0
CG A:ASP650 4.4 69.6 1.0
OD2 A:ASP650 4.5 92.7 1.0

Tantalum binding site 6 out of 18 in 1z7l

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Tantalum binding site 6 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 6 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ta999

b:86.0
occ:0.15
TA6 A:TBR999 0.0 86.0 0.1
BR4 A:TBR999 2.6 87.0 0.1
BRB A:TBR999 2.6 86.7 0.1
BRC A:TBR999 2.6 86.7 0.1
BR8 A:TBR999 2.6 86.2 0.1
TA4 A:TBR999 2.9 83.4 0.1
TA5 A:TBR999 2.9 86.0 0.1
TA2 A:TBR999 2.9 86.7 0.1
TA1 A:TBR999 3.0 88.3 0.1
BR9 A:TBR999 4.2 86.7 0.1
BR7 A:TBR999 4.2 86.0 0.1
BR3 A:TBR999 4.2 86.7 0.1
TA3 A:TBR999 4.2 86.6 0.1
BR1 A:TBR999 4.2 87.0 0.1

Tantalum binding site 7 out of 18 in 1z7l

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Tantalum binding site 7 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 7 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1000

b:89.0
occ:0.19
TA1 B:TBR1000 0.0 89.0 0.2
BR3 B:TBR1000 2.6 88.0 0.2
BR4 B:TBR1000 2.6 88.0 0.2
BR2 B:TBR1000 2.6 87.8 0.2
BR1 B:TBR1000 2.6 87.5 0.2
TA5 B:TBR1000 2.9 86.8 0.2
TA6 B:TBR1000 2.9 86.7 0.2
TA2 B:TBR1000 2.9 87.0 0.2
TA3 B:TBR1000 3.0 86.8 0.2
TA4 B:TBR1000 4.1 86.3 0.2
BR6 B:TBR1000 4.1 87.9 0.2
BRB B:TBR1000 4.2 86.9 0.2
BRC B:TBR1000 4.2 87.5 0.2
BR5 B:TBR1000 4.2 87.6 0.2

Tantalum binding site 8 out of 18 in 1z7l

Go back to Tantalum Binding Sites List in 1z7l
Tantalum binding site 8 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 8 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1000

b:87.0
occ:0.19
TA2 B:TBR1000 0.0 87.0 0.2
BRC B:TBR1000 2.6 87.5 0.2
BR9 B:TBR1000 2.6 88.0 0.2
BR5 B:TBR1000 2.6 87.6 0.2
BR1 B:TBR1000 2.6 87.5 0.2
TA4 B:TBR1000 2.9 86.3 0.2
TA6 B:TBR1000 2.9 86.7 0.2
TA3 B:TBR1000 2.9 86.8 0.2
TA1 B:TBR1000 2.9 89.0 0.2
TA5 B:TBR1000 4.1 86.8 0.2
BRA B:TBR1000 4.2 87.7 0.2
BR4 B:TBR1000 4.2 88.0 0.2
BR2 B:TBR1000 4.2 87.8 0.2
BR8 B:TBR1000 4.2 87.4 0.2

Tantalum binding site 9 out of 18 in 1z7l

Go back to Tantalum Binding Sites List in 1z7l
Tantalum binding site 9 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 9 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1000

b:86.8
occ:0.19
TA3 B:TBR1000 0.0 86.8 0.2
BRA B:TBR1000 2.6 87.7 0.2
BR5 B:TBR1000 2.6 87.6 0.2
BR6 B:TBR1000 2.6 87.9 0.2
BR2 B:TBR1000 2.6 87.8 0.2
TA2 B:TBR1000 2.9 87.0 0.2
TA4 B:TBR1000 2.9 86.3 0.2
TA5 B:TBR1000 3.0 86.8 0.2
TA1 B:TBR1000 3.0 89.0 0.2
BR9 B:TBR1000 4.2 88.0 0.2
TA6 B:TBR1000 4.2 86.7 0.2
BR1 B:TBR1000 4.2 87.5 0.2
BR3 B:TBR1000 4.2 88.0 0.2
BR7 B:TBR1000 4.2 87.3 0.2
CG B:GLU653 4.4 77.4 1.0

Tantalum binding site 10 out of 18 in 1z7l

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Tantalum binding site 10 out of 18 in the Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme


Mono view


Stereo pair view

A full contact list of Tantalum with other atoms in the Ta binding site number 10 of Crystal Structure of Fragment of Mouse Ubiquitin-Activating Enzyme within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ta1000

b:86.3
occ:0.19
TA4 B:TBR1000 0.0 86.3 0.2
BR7 B:TBR1000 2.6 87.3 0.2
BR8 B:TBR1000 2.6 87.4 0.2
BRA B:TBR1000 2.6 87.7 0.2
BR9 B:TBR1000 2.6 88.0 0.2
TA5 B:TBR1000 2.9 86.8 0.2
TA6 B:TBR1000 2.9 86.7 0.2
TA2 B:TBR1000 2.9 87.0 0.2
TA3 B:TBR1000 2.9 86.8 0.2
TA1 B:TBR1000 4.1 89.0 0.2
BRB B:TBR1000 4.1 86.9 0.2
BR6 B:TBR1000 4.1 87.9 0.2
BRC B:TBR1000 4.2 87.5 0.2
BR5 B:TBR1000 4.2 87.6 0.2

Reference:

R.H.Szczepanowski, R.Filipek, M.Bochtler. Crystal Structure of A Fragment of Mouse Ubiquitin-Activating Enzyme. J.Biol.Chem. V. 280 22006 2005.
ISSN: ISSN 0021-9258
PubMed: 15774460
DOI: 10.1074/JBC.M502583200
Page generated: Wed Dec 16 02:26:09 2020

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